Browse Element(s) Details


Os.11600.1.S1_at

Description gb:AK069591.1
DB_XREF= gi:32979615
TID=Os.11600.1
CNT=54
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.11600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to protein associated with vacuolar sorting GB AAG40621 (OSJNBa0052F07.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023M08, full insert sequence.
FL= gb:AK069591.1 gb:AK099884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5870011/11vacuolar protein sorting-associated protein 35 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58640Os.12938.1.S1_at11/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58640Os.49478.1.S1_at1/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58650Os.10983.1.S1_at11/113+33341534..33344372expressed protein
LOC_Os03g58660OsAffx.13097.1.S1_s_at11/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58660Os.27264.1.A1_at1/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58670NANA3+33356693..33357151Protease inhibitor/seed storage/LTP family protein
LOC_Os03g58690Os.18604.1.S1_at11/113+33360594..33361872expressed protein
LOC_Os03g58700Os.11600.1.S1_at11/113+33363847..33372006vacuolar protein sorting-associated protein 35 family protein, putative, expressed
LOC_Os03g58710Os.14346.1.S1_at11/113+33372162..33375649riboflavin biosynthesis protein, putative, expressed
LOC_Os03g58720Os.18152.1.S1_at10/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_x_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58730Os.2987.3.S1_x_at1/113+33386816..33389951retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g58740Os.27800.1.A1_at11/113+33392339..33395809expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0042147biological_processretrograde transport, endosome to Golgi
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11600.1.S1_at--1044--5491Chr03:33371459..33371483 (25 bp)
GAACACTGTAGCTGATCCATCGACA
LOC_Os03g58700
Os.11600.1.S1_at--189--1311Chr03:33371483..33371507 (25 bp)
AGAGGCCTTCTTTGCAAGCACTTTA
LOC_Os03g58700
Os.11600.1.S1_at--501--2411Chr03:33371567..33371591 (25 bp)
AAAAACTACCTGATTGTGCACTAAG
LOC_Os03g58700
Os.11600.1.S1_at--636--1911Chr03:33371614..33371638 (25 bp)
ACGTGTTGTTTTTGTCTCGAGTCAT
LOC_Os03g58700
Os.11600.1.S1_at--582--4451Chr03:33371681..33371705 (25 bp)
GCCTCTGGCCTAAAGGATCTTTGCA
LOC_Os03g58700
Os.11600.1.S1_at--26--8791Chr03:33371711..33371735 (25 bp)
TGTTATTTGTGCATCTTACGCTCAA
LOC_Os03g58700
Os.11600.1.S1_at--353--9311Chr03:33371745..33371769 (25 bp)
TCCCCTCCATTTTGTGACATGTTTG
LOC_Os03g58700
Os.11600.1.S1_at--236--7511Chr03:33371780..33371804 (25 bp)
GTGGCAATAAGCTTTACCCTTGGGA
LOC_Os03g58700
Os.11600.1.S1_at--321--8191Chr03:33371802..33371826 (25 bp)
GGAAGCTCAGATCTGTACAGCGCAA
LOC_Os03g58700
Os.11600.1.S1_at--774--2151Chr03:33371818..33371842 (25 bp)
ACAGCGCAACTTGTGTACCAGAGTA
LOC_Os03g58700
Os.11600.1.S1_at--28--191Chr03:33371930..33371954 (25 bp)
ATTTCTATTTATCTGGCTGGACCTT
LOC_Os03g58700
Target Sequence 
GAACACTGTAGCTGATCCATCGACAGAGGCCTTCTTTGCAAGCACTTTACGTTACATTGAATTCCAGAAGCAGAAAGGTG
GGAGCATAGGTGAAAAATATGAGCAAATAAAAACTACCTGATTGTGCACTAAGTCAAAACAAGAACAGCGTCACGACGTG
TTGTTTTTGTCTCGAGTCATATTTGCGGAAGTTCAGTGAAATACAAGCCATTGGTCTCANCTGCCTCTGGCCTAAAGGAT
CTTTGCATCTGTTGTTATTTGTGCATCTTACGCTCAAAGCGGGGCCTCCCCTCCATTTTGTGACATGTTTGGGTTAGTCA
GGTGGCAATAAGCTTTACCCTTGGGAAGCTCAGATCTGTACAGCGCAACTTGTGTACCAGAGTATCATTGTTGTATATCC
TTTTTCTTTCTNTTCTTTTTTTGTCAAAGAACAATTTTAGGGTTCTAACTTTTTTAACTTTGGAGGTACATATTTCTATT
TATCTGGCTGGACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis