Browse Element(s) Details


Os.11603.1.S1_at

Description gb:AK102631.1
DB_XREF= gi:32987840
TID=Os.11603.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11603 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099L17, full insert sequence.
FL= gb:AK102631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5359011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53530Os.25518.1.S1_at11/113+30651649..30655069WD-repeat protein 4, putative, expressed
LOC_Os03g53540Os.55059.1.S1_at11/113+30658237..30659145expressed protein
LOC_Os03g53550Os.31662.1.S1_at11/113+30661923..30663971retrotransposon protein, putative, unclassified, expressed
LOC_Os03g53560OsAffx.19542.3.S1_x_at6/113+30664021..30668243retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g53570NANA3+30669535..30670311retrotransposon protein, putative, unclassified
LOC_Os03g53580OsAffx.25704.1.S1_at10/113+30673727..30675773expressed protein
LOC_Os03g53590Os.11603.1.S1_at11/113+30677366..30683868expressed protein
LOC_Os03g53600Os.6095.1.S1_at11/113+30686876..30690666HTH DNA-binding protein, putative, expressed
LOC_Os03g53610NANA3+30691265..30692175Seed maturation protein
LOC_Os03g53620Os.55399.1.S1_at11/113+30693515..30694380Seed maturation protein, expressed
LOC_Os03g53630Os.10544.1.S2_at11/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53630Os.10544.1.S1_at10/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53640Os.20176.1.S1_at11/113+30706199..30707865expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11603.1.S1_at--441--2271Chr03:30677940..30677964 (25 bp)
AAATCTTCCAGCTTACATTACCGAG
LOC_Os03g53590
Os.11603.1.S1_at--1073--7951Chr03:30677916..30677940 (25 bp)
GGATCAACACACACTGTCTGTCAGG
LOC_Os03g53590
Os.11603.1.S1_at--937--6431Chr03:30677798..30677822 (25 bp)
GATCATGTCCTGAGTCTTTATCGTC
LOC_Os03g53590
Os.11603.1.S1_at--512--6571Chr03:30677768..30677792 (25 bp)
GATTCTGAAAGATCCGTCCTTGCAG
LOC_Os03g53590
Os.11603.1.S1_at--521--2371Chr03:30677608..30677632 (25 bp)
AAACGCCATCAGGAGTCATTCAGGA
LOC_Os03g53590
Os.11603.1.S1_at--317--3591Chr03:30677592..30677616 (25 bp)
CATTCAGGAGCATTTCGGGCTACCT
LOC_Os03g53590
Os.11603.1.S1_at--1064--9951Chr03:30677572..30677596 (25 bp)
TACCTGCTGATACTGCCAACTGAGA
LOC_Os03g53590
Os.11603.1.S1_at--619--1971Chr03:30677554..30677578 (25 bp)
ACTGAGAGTGCCTGCTTTGTTGTAC
LOC_Os03g53590
Os.11603.1.S1_at--217--10111Chr03:30677524..30677548 (25 bp)
TATGAGTTTGTTACCAACCCATCTG
LOC_Os03g53590
Os.11603.1.S1_at--662--8091Chr03:30677455..30677479 (25 bp)
GGACATGCCTTTAGGAACCTTCGCT
LOC_Os03g53590
Os.11603.1.S1_at--677--2851Chr03:30677380..30677404 (25 bp)
AAGTGATCGTTCTACTGTCAGCGTC
LOC_Os03g53590
Target Sequence 
AAATCTTCCAGCTTACATTACCGAGGATCAACACACACTGTCTGTCAGGTTCGAAGATTCGATAGATCATGCTCTTAAAG
AACTGAAGAGATCTCAGGAAGCAGAGTACAAGCTGGCAGAGCAGAAGCTTTATTCCCAGAAGGATCATGTCCTGAGTCTT
TATCGTCAGCTTGATTCTGAAAGATCCGTCCTTGCAGACCCTATGCCCTTAGCTGATGATGATGGTTCACTATATAGTAC
ACTAATCACCAATGTTATGAAGCGTGTGGATCAAGTGAAGAGTGAAGAGGAGAAGCTCAAGGTCATGCTGGGAATCGCTG
ATGGATTTGGGAAAACGCCATCAGGAGTCATTCAGGAGCATTTCGGGCTACCTGCTGATACTGCCAACTGAGAGTGCCTG
CTTTGTTGTACTGTCGTATGAGTTTGTTACCAACCCATCTGGTTTGGACTAAACCAGTAATACCGTGAAACTCGCGGTAA
TCCGTGGACATGCCTTTAGGAACCTTCGCTCTCCCTAATACCAGTTTTACCGTTTAGCNAGTACCAGTTTTACCGTACTT
AAAGTGATCGTTCTACTGTCAGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis