Browse Element(s) Details


Os.11608.1.S1_at

Description gb:AK068600.1
DB_XREF= gi:32978617
TID=Os.11608.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phytochrome-associated protein (P0439E07.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154A18, full insert sequence.
FL= gb:AK068600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5388011/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53840Os.2000.2.S1_x_at10/111+31276227..31281586protein kinase family protein, putative, expressed
LOC_Os01g53850OsAffx.11592.2.S1_at11/111+31282309..31283241hypothetical protein
LOC_Os01g53860OsAffx.11593.2.S1_s_at11/111+31288752..31292062expressed protein
LOC_Os01g53870OsAffx.24046.1.S1_at11/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.2.S1_x_at4/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.7.S1_x_at3/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.3.S1_x_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870Os.53053.1.S1_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53880Os.11608.1.S1_at11/111+31302613..31306303AUX/IAA family protein, expressed
LOC_Os01g53890Os.6199.2.A1_at11/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53890Os.6199.3.S1_at5/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53900Os.23236.1.S1_at11/111+31319259..31324028Elongation factor 2, putative, expressed
LOC_Os01g53910Os.34512.1.S1_at11/111+31324833..31326046NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0010102biological_processlateral root morphogenesis
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11608.1.S1_at--943--8151Chr01:31305609..31305629 (21 bp)
GGAAAGTATTTGTCTCAACTGCTAA
LOC_Os01g53880
Os.11608.1.S1_at--779--9971Chr01:31305836..31305860 (25 bp)
TAGCCGTCTAGGAGAGTCACCAATT
LOC_Os01g53880
Os.11608.1.S1_at--145--7671Chr01:31305872..31305896 (25 bp)
GGGATCTTATTAACCATTCGGAATG
LOC_Os01g53880
Os.11608.1.S1_at--65--5291Chr01:31305896..31305920 (25 bp)
GAATGTGTGCACTCAAGCCAGTCCA
LOC_Os01g53880
Os.11608.1.S1_at--925--5691Chr01:31305934..31305958 (25 bp)
GACTACCCCTATTTTGCCTATATAG
LOC_Os01g53880
Os.11608.1.S1_at--671--6951Chr01:31306096..31306120 (25 bp)
GTAGACTTGCAGGTCACCCATGTAA
LOC_Os01g53880
Os.11608.1.S1_at--185--7051Chr01:31306117..31306141 (25 bp)
GTAAAGTGCCTTGTTCTGCGTGATA
LOC_Os01g53880
Os.11608.1.S1_at--611--3111Chr01:31306142..31306166 (25 bp)
AATTTGTATTAATCGCTGCTGCAAC
LOC_Os01g53880
Os.11608.1.S1_at--1079--5151Chr01:31306162..31306186 (25 bp)
GCAACCCGACATGCAGATCTAATGT
LOC_Os01g53880
Os.11608.1.S1_at--379--2991Chr01:31306182..31306206 (25 bp)
AATGTCACCAGCGTGTCTCAGAGGA
LOC_Os01g53880
Os.11608.1.S1_at--690--6471Chr01:31306225..31306249 (25 bp)
GATAGCATCAAGTCATCACTCCACG
LOC_Os01g53880
Target Sequence 
GGAAAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGATTGGAGCTACT
GCTAGGGTCTAGCCGTCTAGGAGAGTCACCAATTGCTGAAATGCTGGGATCTTATTAACCATTCGGAATGAATGTGTGCA
CTCAAGCCAGTCCATTCTCCATTTTAGGACTACCCCTATTTTGCCTATATAGATGATCTACTGAGATGAGTTGGCATACA
GCAAATGCAAGGAAATGGCAATCTGTTTTGTAAATTAGGTTACCTTGCTATGACATGTTGCTTAATTCAATTCGAAGCGA
TTTTGGTTTTATCGGGGAGAGCCGCATATGTAGACTTGCAGGTCACCCATGTAAAGTGCCTTGTTCTGCGTGATAAATTT
GTATTAATCGCTGCTGCAACCCGACATGCAGATCTAATGTCACCAGCGTGTCTCAGAGGACAGCAACNTAGGCTAACCTG
ATAGCATCAAGTCATCACTCCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis