Browse Element(s) Details


Os.11628.1.S1_at

Description gb:AK063731.1
DB_XREF= gi:32973749
TID=Os.11628.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11628 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-E08, full insert sequence.
FL= gb:AK063731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0418011/11Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g039905/11Dual specificity phosphatase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04120OsAffx.30808.1.S1_at11/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.30808.1.S1_x_at11/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.30808.2.S1_x_at2/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.23391.1.S1_at1/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.27782.1.S1_at1/1111+1669896..1671817hypothetical protein
LOC_Os11g04130OsAffx.30809.1.S1_x_at11/1111+1673387..1673715nodulin MtN21 family protein, putative
LOC_Os11g04140Os.53105.1.S1_at6/1111+1676806..1678456Integral membrane protein DUF6 containing protein
LOC_Os11g04150OsAffx.19478.1.S1_at11/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_s_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04160Os.53234.1.S1_at3/1111+1688435..16903414'-phosphopantetheinyl transferase superfamily protein
LOC_Os11g04170Os.49766.1.S1_at11/1111+1690862..1693286Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os11g04174Os.7704.1.S1_at10/1111+1693474..1695093expressed protein
LOC_Os11g04180Os.13586.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g04180Os.11628.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g04190Os.50938.1.S1_at11/1111+1701229..1704478Auxin Efflux Carrier family protein, expressed
LOC_Os11g04200Os.54231.1.S1_at4/1111+1706762..1711766Mpp10 protein, expressed
LOC_Os11g04210Os.17868.1.S1_at10/1111+1714057..1717595Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os11g04220Os.27960.1.S1_a_at10/1111+1717965..1734148HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11628.1.S1_at--918--5392Chr12:1651922..1651946 (25 bp)
GAAGCTATCGTGTATCCACTGCGGA
LOC_Os12g03990
Os.11628.1.S1_at--646--8072Chr12:1651900..1651924 (25 bp)
GGAGCACGGCTAGGATATTTCAACT
LOC_Os12g03990
Os.11628.1.S1_at--729--8191Chr11:1695790..1695814 (25 bp)
GGAATCCAGTGCAACTGTGGCAGCT
LOC_Os11g04180
Os.11628.1.S1_at--446--4352Chr12:1651837..1651861 (25 bp)
CCAGCCTTCCAAATTTCCAAGAGCA
LOC_Os12g03990
Os.11628.1.S1_at--1028--6491Chr11:1695678..1695702 (25 bp)
GATAGTTGTCGGAGGCTAGCAGATT
LOC_Os11g04180
Os.11628.1.S1_at--795--10011Chr11:1695662..1695686 (25 bp)
TAGCAGATTATTTCAGGACCATGTG
LOC_Os11g04180
Os.11628.1.S1_at--879--5892Chr12:1651750..1651774 (25 bp)
GAGCTGGTGTAAATACCGTTTTATC
LOC_Os12g03990
Os.11628.1.S1_at--431--7972Chr12:1651704..1651728 (25 bp)
GGATCTCGACCGAAGATTTTCAGAT
LOC_Os12g03990
Os.11628.1.S1_at--794--5371Chr11:1695542..1695566 (25 bp)
GAAGCATTAGCCTCAGAAACCTCCA
LOC_Os11g04180
Os.11628.1.S1_at--691--5551Chr11:1695527..1695551 (25 bp)
GAAACCTCCACTGTATTACTACTTG
LOC_Os11g04180
Os.11628.1.S1_at--646--5371Chr11:1695496..1695520 (25 bp)
GAAGACTATGCCATCAGTTGCAATT
LOC_Os11g04180
Target Sequence 
GAAGCTATCGTGTATCCACTGCGGAGCACGGCTAGGATATTTCAACTGGTCAGGAATCCAGTGCAACTGTGGCAGCTGGA
TCACCCCAGCCTTCCAAATTTCCAAGAGCAAAGTTGATATTAGTACGACTTAGATAGTTTTTTTTTTGTGGGGTGTACGA
CTTAGATAGTTGTCGGAGGCTAGCAGATTATTTCAGGACCATGTGAGCTGGTGTAAATACCGTTTTATCAGAAGGATTTA
CGAACTCGAAGGATCTCGACCGAAGATTTTCAGATCCATTGTGCNCTAGATAGATATCATGAAGCATTAGCCTCAGAAAC
CTCCACTGTATTACTACTTGGTGTTAGAAGACTATGCCATCAGTTGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis