Browse Element(s) Details


Os.11641.1.S1_at

Description gb:AK068402.1
DB_XREF= gi:32978420
TID=Os.11641.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11641 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151G06, full insert sequence.
FL= gb:AK068402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g065307/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06480Os.49722.2.S1_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06480Os.49722.2.S1_x_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06490Os.9469.1.S1_at11/115+3320083..3322613RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os05g06500Os.10691.1.S1_at10/115+3323165..3325263universal stress protein family protein, expressed
LOC_Os05g06510Os.37384.1.S1_s_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.19268.1.S1_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.37384.1.S1_x_at10/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06520NANA5+3333562..3333816Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g06530Os.24178.1.A1_at10/115+3339204..3342505expressed protein
LOC_Os05g06530Os.24178.1.A1_x_at9/115+3339204..3342505expressed protein
LOC_Os05g06530Os.11641.1.S1_at7/115+3339204..3342505expressed protein
LOC_Os05g06540Os.24080.1.A1_at1/115+3347106..3351035hypothetical protein
LOC_Os05g06540Os.38041.1.S1_at1/115+3347106..3351035hypothetical protein
LOC_Os05g06550NANA5+3357830..3358280hypothetical protein
LOC_Os05g06560OsAffx.4263.1.S1_at11/115+3360749..3362292hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11641.1.S1_at--403--7571Chr09:5700455..5700479 (25 bp)
GGGCGCAATCTTGCATTTCACTGAT
NONE
Os.11641.1.S1_at--691--10331Chr09:5700470..5700494 (25 bp)
TTTCACTGATTTGTTTGCTCCTCAC
NONE
Os.11641.1.S1_at--539--4832Chr09:5700527..5700551 (25 bp)
GCTCACTCCTCACTAATTGGTTGGA
NONE
Os.11641.1.S1_at--412--6612Chr09:5700546..5700570 (25 bp)
GTTGGAGCTCATATGCATGCATCTG
NONE
Os.11641.1.S1_at--383--871Chr09:5700576..5700600 (25 bp)
ATGGCTGTGGTCATGCTTTGAGTGC
NONE
Os.11641.1.S1_at--752--6632Chr09:5700641..5700665 (25 bp)
GTTGTGCTACTATCTTTGTGGTCTT
NONE
Os.11641.1.S1_at--452--8672Chr09:5700657..5700681 (25 bp)
TGTGGTCTTGTGTGAAGCTTCCTAT
NONE
Os.11641.1.S1_at--633--771Chr09:5700761..5700785 (25 bp)
ATGTGCGGCTTCTTTGTGTTAATTA
NONE
Os.11641.1.S1_at--1130--112Chr09:5700782..5700806 (25 bp)
ATTAGCCGGATGACGAACCCGACTT
NONE
Os.11641.1.S1_at--683--7692Chr09:5700891..5700915 (25 bp)
GGGTCTGACGGCAACATTTATTTAC
NONE
Os.11641.1.S1_at--290--753Chr09:5700949..5700973 (25 bp)
ATGTATGTCCTGTGCAACCGTATAT
NONE
Target Sequence 
GGGCGCAATCTTGCATTTCACTGATTTGTTTGCTCCTCACTCCCTACTTNTCTCCTCCTCCTCTCCTGGGCTGCTCACTC
CTCACTAATTGGTTGGAGCTCATATGCATGCATCTGCTGCCATGGCTGTGGTCATGCTTTGAGTGCTTGACCAAGGTGNG
ATAGAGTCTTGACCAAAGTGGATGGAGTTGTGCTACTATCTTTGTGGTCTTGTGTGAAGCTTCCTATGTGGAGCTATGTG
ATTGGTGGATAATTAATACTGCTGGTGAATTGAGGTCCCTTTGGTGAGATTAATTCTTTATATGAGATGTGCGGCTTCTT
TGTGTTAATTAGCCGGATGACGAACCCGACTTAAGTGAGGGGTGCCAGACGGTATTAGCTGATCTAGGTGATCTAGGTAT
CTCAGTGAACGGTTGAATATACACCACTTTGTGTATGGGTCTGACGGCAACATTTATTTACATATTACCTTTTGTGCATA
AAAGGGGTCAAGCTATGTATGTCCTGTGCAACCGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis