Browse Element(s) Details


Os.11675.1.A1_at

Description gb:AK066763.1
DB_XREF= gi:32976781
TID=Os.11675.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074J19, full insert sequence.
FL= gb:AK066763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4165011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41600Os.28213.1.S1_at11/1112+25710404..25712018expressed protein
LOC_Os12g41610NANA12+25717312..25717683hypothetical protein
LOC_Os12g41620Os.8281.1.S1_at11/1112+25718496..25724633transducin family protein, putative, expressed
LOC_Os12g41630OsAffx.32138.1.S1_at11/1112+25724952..25726005F-box domain containing protein, expressed
LOC_Os12g41634NANA12+25730008..25730244hypothetical protein
LOC_Os12g41640OsAffx.32139.1.S1_at11/1112+25731346..25731873hypothetical protein
LOC_Os12g41650Os.11675.1.A1_at11/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41650OsAffx.13917.1.S1_x_at1/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41650OsAffx.29544.1.S1_x_at1/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41660NANA12+25747579..25748688hypothetical protein
LOC_Os12g41670Os.54687.1.S1_at11/1112+25757103..25762761expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11675.1.A1_at--456--4171Chr12:25737968..25738228 (25 bp)
CGCCTCCGATGCATTACCTGCAGGG
LOC_Os12g41650
Os.11675.1.A1_at--701--4711Chr12:25738251..25738275 (25 bp)
GCGGCCAAGAACCTTCAGCAGCAGC
LOC_Os12g41650
Os.11675.1.A1_at--326--8951Chr12:25738331..25738355 (25 bp)
TGACTCCTGACGACATTCTGCACAA
LOC_Os12g41650
Os.11675.1.A1_at--497--8491Chr12:25739150..25739174 (25 bp)
TGGCACCAGTTGATTGCCGTCAATC
LOC_Os12g41650
Os.11675.1.A1_at--250--6511Chr12:25739179..25739203 (25 bp)
GATATGTATATAAGGCTCTGATGCA
LOC_Os12g41650
Os.11675.1.A1_at--226--8351Chr12:25739216..25739240 (25 bp)
GGCTGGATCATGATGGCTACCTAAT
LOC_Os12g41650
Os.11675.1.A1_at--702--411Chr12:25739259..25739283 (25 bp)
ATCATCCCTTTTACTGACGTCTAAA
LOC_Os12g41650
Os.11675.1.A1_at--1011--5171Chr12:25739274..25739298 (25 bp)
GACGTCTAAATTCGGTAGGCAGTGT
LOC_Os12g41650
Os.11675.1.A1_at--424--931Chr12:25739290..25739314 (25 bp)
AGGCAGTGTAGATCGATCAGCGGTT
LOC_Os12g41650
Os.11675.1.A1_at--96--411Chr12:25739394..25739418 (25 bp)
ATCAGTTGTTGATGTACCTGTTCAA
LOC_Os12g41650
Os.11675.1.A1_at--34--8771Chr12:25739412..25739436 (25 bp)
TGTTCAAATTTATGCCAACCAGAGC
LOC_Os12g41650
Target Sequence 
CGCCTCCGATGCATTACCTGCAGGGGATGAGCTTCTACCAGCTCGCCGCGGCCAAGAACCTTCAGCAGCAGCAGAACACG
GCGGAGGCGCCGCCACCGCCACCGGCCGGAGGCAACCGCGCAGCCGCTGACTCCTGACGACATTCTGCACAAAAAATACG
ACAACTGTAGTAAGTCTGAGAGCAAGGGTGGCACCAGTTGATTGCCGTCAATCTGAAGATATGTATATAAGGCTCTGATG
CAATTGAGTTGAGAGGCTGGATCATGATGGCTACCTAATCATTAAGGGGAATTTAAGATCATCCCTTTTACTGACGTCTA
AATTCGGTAGGCAGTGTAGATCGATCAGCGGTTAAGAGTTAACAAGTCGTGAATTCTTTTTTGCTATGTATGTAGTACTA
TTTTTTCCCCTTTGGGGAGACATTGGTTATGTATCAGTTGTTGATGTACCTGTTCAAATTTATGCCAACCAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11675.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis