Browse Element(s) Details


Os.11677.2.S1_at

Description gb:AK065809.1
DB_XREF= gi:32975827
TID=Os.11677.2
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11677 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036H14, full insert sequence.
FL= gb:AK105073.1 gb:AK065809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g031907/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03160NANA5+1244665..1245102hypothetical protein
LOC_Os05g03174Os.20262.1.S1_at10/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed
LOC_Os05g03174Os.52448.2.S1_at3/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed
LOC_Os05g03190Os.11677.1.S1_x_at10/115+1269444..1273561IQ calmodulin-binding motif family protein, expressed
LOC_Os05g03190Os.11677.2.S1_at7/115+1269444..1273561IQ calmodulin-binding motif family protein, expressed
LOC_Os05g03200OsAffx.4238.1.S1_at11/115+1273739..1276638expressed protein
LOC_Os05g03200Os.48994.1.A1_at10/115+1273739..1276638expressed protein
LOC_Os05g03210Os.52836.1.S1_at11/115+1278471..1280225F-box domain containing protein, expressed
LOC_Os05g03220NANA5+1281779..1283008retrotransposon protein, putative, unclassified
LOC_Os05g03230OsAffx.21465.1.S1_x_at2/115+1284947..1286285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g03240OsAffx.4239.1.S1_at11/115+1288595..1289616hypothetical protein
LOC_Os05g03250NANA5+1291974..1293965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g03260NANA5+1295248..1295865hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0019761biological_processglucosinolate biosynthesis
GO:0005634cellular_componentnucleus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11677.2.S1_at--1116--1151Chr05:1273464..1273488 (25 bp)
AGTCTCTTCTATTTATGTGAGCCAC
LOC_Os05g03190
Os.11677.2.S1_at--135--9531Chr05:1273466..1273490 (25 bp)
TCTCTTCTATTTATGTGAGCCACAT
LOC_Os05g03190
Os.11677.2.S1_at--228--791Chr05:1273478..1273502 (25 bp)
ATGTGAGCCACATATTTCTTTTTGT
LOC_Os05g03190
Os.11677.2.S1_at--101--7391Chr05:1273480..1273504 (25 bp)
GTGAGCCACATATTTCTTTTTGTGA
LOC_Os05g03190
Os.11677.2.S1_at--8--5871Chr05:1273482..1273506 (25 bp)
GAGCCACATATTTCTTTTTGTGAAG
LOC_Os05g03190
Os.11677.2.S1_at--349--191Chr05:1273491..1273515 (25 bp)
ATTTCTTTTTGTGAAGATCCCTCTG
LOC_Os05g03190
Os.11677.2.S1_at--561--5331NONE
GAAGTCTGAACAGTGCAATCGCAAT
NONE
Os.11677.2.S1_at--640--7171Chr05:1273518..1273537 (20 bp)
GTCTGAACAGTGCAATCGCAATGGC
LOC_Os05g03190
Os.11677.2.S1_at--763--3851NONE
CTGAACAGTGCAATCGCAATGGCAG
NONE
Os.11677.2.S1_at--578--3031NONE
AATCGCAATGGCAGAGTTTGTTGTA
NONE
Os.11677.2.S1_at--32--531NONE
ATCGCAATGGCAGAGTTTGTTGTAT
NONE
Target Sequence 
AGTCTCTTCTATTTATGTGAGCCACATATTTCTTTTTGTGAAGATCCCTCTGAAGTCTGAACAGTGCAATCGCAATGGCA
GAGTTTGTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11677.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis