Browse Element(s) Details


Os.11713.1.S1_x_at

Description gb:AK073518.1
DB_XREF= gi:32983541
TID=Os.11713.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042I08, full insert sequence.
FL= gb:AK073518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g142306/11Villin-4, putative, expressed
LOC_Os06g046405/11DNA-binding bromodomain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14200Os.23174.1.S1_s_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200Os.23174.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200OsAffx.16990.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14210OsAffx.5812.1.S1_at11/118+8487518..8488973Glycosyl hydrolases family 16 protein
LOC_Os08g14220OsAffx.29192.1.S1_at11/118+8491020..8493756expressed protein
LOC_Os08g14230Os.11713.1.S1_at11/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230Os.11713.3.S1_at11/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230Os.11713.1.S1_x_at6/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230OsAffx.15635.1.S1_at1/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14250NANA8+8533940..8539012retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0007015biological_processactin filament organization
GO:0010030biological_processpositive regulation of seed germination
GO:0030835biological_processnegative regulation of actin filament depolymerization
GO:0005634cellular_componentnucleus
GO:0015629cellular_componentactin cytoskeleton
GO:0003677molecular_functionDNA binding
GO:0003779molecular_functionactin binding
GO:0004406molecular_functionH3/H4 histone acetyltransferase activity
GO:0051015molecular_functionactin filament binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11713.1.S1_x_at--511--10371Chr08:8509957..8509981 (25 bp)
TTTTCTCATGTATCCTACCCAAAGG
LOC_Os08g14230
Os.11713.1.S1_x_at--835--7831Chr08:8509980..8510004 (25 bp)
GGTAACCATGAATTGACCATTCTAT
LOC_Os08g14230
Os.11713.1.S1_x_at--878--10211Chr08:8510012..8510036 (25 bp)
TATTCAGTTCACATTGCTCTTCGAG
LOC_Os08g14230
Os.11713.1.S1_x_at--973--2071Chr08:8510022..8510046 (25 bp)
ACATTGCTCTTCGAGTTTTCTGATA
LOC_Os08g14230
Os.11713.1.S1_x_at--975--10191Chr08:8510045..8510069 (25 bp)
TATATATCTGCTCTTCTATTCTGCC
LOC_Os08g14230
Os.11713.1.S1_x_at--297--9551Chr08:8510059..8510083 (25 bp)
TCTATTCTGCCAACAACACCTATTG
LOC_Os08g14230
Os.11713.1.S1_x_at--889--6491Chr06:2026706..2026730 (25 bp)
GATATGCAATGCTCTGGCCAGAACT
LOC_Os06g04640
Os.11713.1.S1_x_at--98--5171Chr06:2026751..2026775 (25 bp)
GCAACCTAATTAGTGGCCTCTGACC
LOC_Os06g04640
Os.11713.1.S1_x_at--1113--4451Chr06:2026766..2026790 (25 bp)
GCCTCTGACCATTGTGCATTTGTGT
LOC_Os06g04640
Os.11713.1.S1_x_at--730--9751Chr06:2026836..2026860 (25 bp)
TAATCTCTTCCTTCTATGGAGCATG
LOC_Os06g04640
Os.11713.1.S1_x_at--230--351Chr06:2026864..2026888 (25 bp)
ATAACTAGTCTCTGCTTAGCTGTGT
LOC_Os06g04640
Target Sequence 
TTTTCTCATGTATCCTACCCAAAGGTAACCATGAATTGACCATTCTATTATAATTTATTCAGTTCACATTGCTCTTCGAG
TTTTCTGATATATATCTGCTCTTCTATTCTGCCAACAACACCTATTGGGGTCTCTGCCACCTGTCTCCAGAAGAGCTTAC
TAAGGCATTGGAGATGGTTGCACAAGACAACCCTAGCTTCGAAGCTAAAGGAGACGAACTGGAACTTGATATGGATGCTC
AGAGTGAGACAACCCTCTGGAGGTTGAAATTCTTTGTGAGGGAAGCATTGGAACGACAGGCCAACGTCGCTTCTGGCAGG
ACTGATGAAAATGCGAAAAGAAAGAGGGAGATATGCAATGCTCTGGCCAGAACTGCTTCAAAAAGAGTCAAGCAGCAACC
TAATTAGTGGCCTCTGACCATTGTGCATTTGTGTCTTCACTTGTTGTTTAGAATGTTTCTGAGAAATAGCCTTGCAAAAT
AATCTCTTCCTTCTATGGAGCATGTAAATAACTAGTCTCTGCTTAGCTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11713.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis