Browse Element(s) Details


Os.11716.1.S1_at

Description gb:AK103827.1
DB_XREF= gi:32989036
TID=Os.11716.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0008A05.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147N02, full insert sequence.
FL= gb:AK103827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1836411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18330OsAffx.18286.1.S1_at11/1110+8980933..8981682hypothetical protein
LOC_Os10g18340Os.12787.1.S1_at11/1110+8984080..8984965expressed protein
LOC_Os10g18350NANA10+8987788..8991340hypothetical protein
LOC_Os10g18360Os.1709.1.S1_x_at11/1110+8991814..8996558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18364Os.11716.1.S1_at11/1110+8999272..9005164expressed protein
LOC_Os10g18370Os.7711.1.S1_at11/1110+9006514..9007842Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g18380OsAffx.30446.1.S1_at11/1110+9010894..9011933hypothetical protein
LOC_Os10g18390OsAffx.2524.1.S1_at9/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_x_at2/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18390OsAffx.19264.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18400Os.46702.1.S1_at11/1110+9017673..9025056Beta-galactosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11716.1.S1_at--972--6471Chr10:9004270..9004294 (25 bp)
GATACTGGATCATCTGAACACAAGT
LOC_Os10g18364
Os.11716.1.S1_at--1003--5431Chr10:9004325..9004662 (25 bp)
GAACCGGTTATAGCATACTTCAGGA
LOC_Os10g18364
Os.11716.1.S1_at--653--10531Chr10:9004656..9004680 (25 bp)
TTCAGGAACATCTTCCCAGTTGTCC
LOC_Os10g18364
Os.11716.1.S1_at--1142--1231Chr10:9004673..9004697 (25 bp)
AGTTGTCCCCATGTGTGTGTCATGC
LOC_Os10g18364
Os.11716.1.S1_at--22--6531Chr10:9004714..9004738 (25 bp)
GATTTGAGCACCACACTTTGGGCAA
LOC_Os10g18364
Os.11716.1.S1_at--225--2391Chr10:9004741..9004765 (25 bp)
AAACGGGAGGTACTGCAGCTGAACT
LOC_Os10g18364
Os.11716.1.S1_at--392--2571Chr10:9004762..9004786 (25 bp)
AACTGTGGCGTGCTGTCATTCAGTA
LOC_Os10g18364
Os.11716.1.S1_at--408--1211Chr10:9004839..9004863 (25 bp)
AGTTTTCTCTTTACACTAGTTGTCT
LOC_Os10g18364
Os.11716.1.S1_at--344--6251Chr10:9004914..9004938 (25 bp)
GATGGTATCTTGCATGCTTTAGCTT
LOC_Os10g18364
Os.11716.1.S1_at--567--5651Chr10:9004971..9004995 (25 bp)
GACAGTTTCTGGTTATCACTCTTCT
LOC_Os10g18364
Os.11716.1.S1_at--1143--7171Chr10:9005088..9005113 (25 bp)
GTCTGTTCAACCAAAATTCTTCATT
LOC_Os10g18364
Target Sequence 
GATACTGGATCATCTGAACACAAGTGATGAATAAAGATACTTGAAGCTTATGGTTGAACCGGTTATAGCATACTTCAGGA
ACATCTTCCCAGTTGTCCCCATGTGTGTGTCATGCCACAAGTGCAGCCAAGGATTTGAGCACCACACTTTGGGCAAAGAA
ACGGGAGGTACTGCAGCTGAACTGTGGCGTGCTGTCATTCAGTAAAGAAACAAACTTGGCTGGAACCAAACAGGTCTTTA
ACCTGCTGATGTACATAGTTTTCTCTTTACACTAGTTGTCTTATTTTTTGTTGCAAATCATGTAGAAATAAAAAAAAATC
CTTGCTTGGATGATGGTATCTTGCATGCTTTAGCTTGAATTGCTCTGGAAATTTTATCTGGTCAGTAAGACAGTTTCTGG
TTATCACTCTTCTGTCTTCTCCAGTTTTCTTTGGTCATAATTTTGCTTTTAGTTTGTATAGTTCAAATATCATAATTTAT
TGCAATGTACCTTTGATATTTGTTTGTCTGTTCAACCAAAATTCTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis