Browse Element(s) Details


Os.11732.1.S1_a_at

Description gb:AK101760.1
DB_XREF= gi:32986969
TID=Os.11732.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11732 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033063P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033063P17, full insert sequence.
FL= gb:AK101760.1 gb:AK065645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4767011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47640Os.51217.3.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47640Os.51217.2.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47650Os.53444.1.S1_at11/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47650Os.26133.1.S1_at9/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47660Os.7751.1.S1_at11/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g47660Os.50309.1.S1_at1/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g47670Os.11732.1.S1_a_at11/112+29129182..29135763U-box domain containing protein, expressed
LOC_Os02g47680Os.33878.1.S1_at3/112+29140947..29143719hypothetical protein
LOC_Os02g47680Os.47999.3.S1_x_at1/112+29140947..29143719hypothetical protein
LOC_Os02g47680Os.27102.1.S1_x_at1/112+29140947..29143719hypothetical protein
LOC_Os02g47690Os.27691.1.S1_x_at3/112+29150245..29155978retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47690Os.27691.2.S1_x_at3/112+29150245..29155978retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11732.1.S1_a_at--314--3831Chr02:29130241..29130265 (25 bp)
CTGCCCTTGTGGACTTGTCAGTAAA
LOC_Os02g47670
Os.11732.1.S1_a_at--561--671Chr02:29130188..29130212 (25 bp)
ATGAAGCTACTTCATCTTCTCAGGG
LOC_Os02g47670
Os.11732.1.S1_a_at--864--9631Chr02:29130169..29130193 (25 bp)
TCAGGGATCTGAGGCGAACCGACCA
LOC_Os02g47670
Os.11732.1.S1_a_at--668--8371Chr02:29130157..29130181 (25 bp)
GGCGAACCGACCAGTTGAACAACTC
LOC_Os02g47670
Os.11732.1.S1_a_at--673--3511Chr02:29130133..29130157 (25 bp)
CATGTTCACAAGAAGTGGTTGTCAC
LOC_Os02g47670
Os.11732.1.S1_a_at--1081--9671Chr02:29130112..29130136 (25 bp)
TCACAGATGTAGTGGAGGGTCCTCC
LOC_Os02g47670
Os.11732.1.S1_a_at--109--1071Chr02:29130097..29130121 (25 bp)
AGGGTCCTCCTGACAGTTCAATTCA
LOC_Os02g47670
Os.11732.1.S1_a_at--749--5651Chr02:29130086..29130110 (25 bp)
GACAGTTCAATTCACAAGCAGCCAA
LOC_Os02g47670
Os.11732.1.S1_a_at--602--9691Chr02:29130075..29130099 (25 bp)
TCACAAGCAGCCAATACCAAAGTCA
LOC_Os02g47670
Os.11732.1.S1_a_at--154--5491Chr02:29130027..29130051 (25 bp)
GAACATTTTCTCAAAGCCCCGGTCA
LOC_Os02g47670
Os.11732.1.S1_a_at--678--4191Chr02:29130010..29130034 (25 bp)
CCCGGTCACTTACGCTATTCTGAAA
LOC_Os02g47670
Target Sequence 
CTGCCCTTGTGGACTTGTCAGTAAATGGAATTGATGAAGCAAAAGGTTGTTCAATGAAGCTACTTCATCTTCTCAGGGAT
CTGAGGCGAACCGACCAGTTGAACAACTCATGTTCACAAGAAGTGGTTGTCACAGATGTAGTGGAGGGTCCTCCTGACAG
TTCAATTCACAAGCAGCCAATACCAAAGTCATCTCGTTTTTTCCAAAGAAAGTTGAACATTTTCTCAAAGCCCCGGTCAC
TTACGCTATTCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11732.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis