Browse Element(s) Details


Os.7751.1.S1_at

Description gb:AK119183.1
DB_XREF= gi:37988806
TID=Os.7751.1
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D03, full insert sequence.
FL= gb:AK073952.1 gb:AK119183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4766011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47610Os.8713.1.S1_at11/112+29089118..29091582NmrA-like family protein, expressed
LOC_Os02g47620Os.11566.1.S1_at11/112+29093171..29095421hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g47630OsAffx.24768.1.S1_at11/112+29099537..29101181hypothetical protein
LOC_Os02g47640Os.51217.3.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47640Os.51217.2.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47650Os.53444.1.S1_at11/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47650Os.26133.1.S1_at9/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47660Os.7751.1.S1_at11/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g47660Os.50309.1.S1_at1/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g47670Os.11732.1.S1_a_at11/112+29129182..29135763U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7751.1.S1_at--874--3411Chr02:29112252..29112379 (25 bp)
CAGAAGCAAGTCGAGTTCTTGTCCA
LOC_Os02g47660
Os.7751.1.S1_at--580--3611Chr02:29112235..29112259 (25 bp)
CTTGTCCATGAAGATCGCGGCATCA
LOC_Os02g47660
Os.7751.1.S1_at--125--9331Chr02:29112221..29112245 (25 bp)
TCGCGGCATCAAACCCGGTGGTGAA
LOC_Os02g47660
Os.7751.1.S1_at--1159--1291Chr02:29112065..29112089 (25 bp)
AGATGCAAACTTCTGCAGGATCCTC
LOC_Os02g47660
Os.7751.1.S1_at--583--6371Chr02:29112047..29112071 (25 bp)
GATCCTCTGGCTATGGGCTGGAGAT
LOC_Os02g47660
Os.7751.1.S1_at--973--7791Chr02:29112022..29112046 (25 bp)
GGTCGTCAGTAACCAGTACTCACCA
LOC_Os02g47660
Os.7751.1.S1_at--125--7531Chr02:29111865..29111985 (25 bp)
GTGGAGCCATGCCTCAACGTGAATG
LOC_Os02g47660
Os.7751.1.S1_at--394--9051Chr02:29111836..29111860 (25 bp)
TGCAGGTTGGGACATTGGCTCTCAC
LOC_Os02g47660
Os.7751.1.S1_at--1053--8311Chr02:29111820..29111844 (25 bp)
GGCTCTCACGGTTTGTTCAGTGGAT
LOC_Os02g47660
Os.7751.1.S1_at--1009--6311Chr02:29111793..29111817 (25 bp)
GATGCACCGTTTCAGTCAGTACAGA
LOC_Os02g47660
Os.7751.1.S1_at--313--5971Chr02:29111302..29111326 (25 bp)
GAGAAGTCCGCATTCCAAGAGTTTT
LOC_Os02g47660
Target Sequence 
CAGAAGCAAGTCGAGTTCTTGTCCATGAAGATCGCGGCATCAAACCCGGTGGTGAACTTCAACATCGTCGAGGACCTCTT
CGGCCGGCAGCTCAGCCAGGCGGCGTGCAACCCTGCGGCTCTGCCGGCCATGGCGCTGCCGATGGCGCAGGTCGAGCCTT
CCTGCCTCCAGATGAGCCCCTTGCAGCAGATGCAAACTTCTGCAGGATCCTCTGGCTATGGGCTGGAGATGGTCGTCAGT
AACCAGTACTCACCACCGGGCGGGCCGATGTCGGTGCCGGCCGGTGCATCGGTGGAGCCATGCCTCAACGTGAATGGAGC
TGCAGGTTGGGACATTGGCTCTCACGGTTTGTTCAGTGGATTTGATGCACCGTTTCAGTCAGTACAGAGTGATTGTTTGC
TAGACAATCTCAAAATGGAAATGTAAGAAGGAATGAAGGAAGGAGAAGTCCGCATTCCAAGAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis