Browse Element(s) Details


OsAffx.24768.1.S1_at

Description tigr:9630.m04636
TID=OsAffx.24768.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4763011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47590Os.16681.1.S1_at10/112+29072491..29075389Ornithine carbamoyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47600Os.8567.1.S1_at10/112+29075952..29080833Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os02g47610Os.8713.1.S1_at11/112+29089118..29091582NmrA-like family protein, expressed
LOC_Os02g47620Os.11566.1.S1_at11/112+29093171..29095421hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g47630OsAffx.24768.1.S1_at11/112+29099537..29101181hypothetical protein
LOC_Os02g47640Os.51217.3.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47640Os.51217.2.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47650Os.53444.1.S1_at11/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47650Os.26133.1.S1_at9/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47660Os.7751.1.S1_at11/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g47660Os.50309.1.S1_at1/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24768.1.S1_at--581--5431Chr02:29100234..29100258 (25 bp)
GAACCAGAGATGACGCCGGAACATG
LOC_Os02g47630
OsAffx.24768.1.S1_at--293--6051Chr02:29100261..29100285 (25 bp)
GAGTTGGACCCCTTGGCGTCCGGAT
LOC_Os02g47630
OsAffx.24768.1.S1_at--844--8611Chr02:29100301..29100325 (25 bp)
TGGTGTAGGTGTGGTCTCCACGTAC
LOC_Os02g47630
OsAffx.24768.1.S1_at--202--9951Chr02:29100323..29100347 (25 bp)
TACGCCCTCCCACATGAATATAAGA
LOC_Os02g47630
OsAffx.24768.1.S1_at--706--9011Chr02:29100402..29100426 (25 bp)
TGCAATCATGCCAATGTGCCAATGG
LOC_Os02g47630
OsAffx.24768.1.S1_at--884--2711Chr02:29100441..29100465 (25 bp)
AAGCAGCTGTCACCCTCATGAAGGG
LOC_Os02g47630
OsAffx.24768.1.S1_at--241--5211Chr02:29100748..29100772 (25 bp)
GAATTCATTGAACCTCCTCTAGCAT
LOC_Os02g47630
OsAffx.24768.1.S1_at--700--691Chr02:29100824..29100848 (25 bp)
ATGAGCCACCATACTGTCAAGCATG
LOC_Os02g47630
OsAffx.24768.1.S1_at--1131--7671Chr02:29100848..29100872 (25 bp)
GGGTTCATGGATCTGCCGCAATGAT
LOC_Os02g47630
OsAffx.24768.1.S1_at--683--8131Chr02:29101076..29101100 (25 bp)
GGACAGGGTAGATGCCACAAACACA
LOC_Os02g47630
OsAffx.24768.1.S1_at--397--2411Chr02:29101094..29101118 (25 bp)
AAACACACGTGGTCACCATGCAATC
LOC_Os02g47630
Target Sequence 
GAACCAGAGATGACGCCGGAACATGGAGAGTTGGACCCCTTGGCGTCCGGATGGAGGCGAGGAAATGTGGTGTAGGTGTG
GTCTCCACGTACGCCCTCCCACATGAATATAAGATGAGATGTAATGAATGCCTTGAATGGATTGCAAGAGGGGGGCGATG
CAATGCAATGCAATCATGCCAATGTGCCAATGGCAATGGCAACCAACAAGCAGCTGTCACCCTCATGAAGGGGGTGCAAA
ATGAATTCATTGAACCTCCTCTAGCATTTGGGAGGGTAAATTCAGTGAACATAGCAATATCCAATCTCAAAAGTTCAGAT
GAGCCACCATACTGTCAAGCATGGGTTCATGGATCTGCCGCAATGATGTGGAATGTTCGTAATCCAGAATCTAAGGAGGA
CAGGGTAGATGCCACAAACACACGTGGTCACCATGCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis