Browse Element(s) Details


Os.16681.1.S1_at

Description gb:CR286821
DB_XREF= gi:44673387
DB_XREF=CR286821
CLONE=y666b08p3
TID=Os.16681.1
CNT=13
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16681 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein sp:O50039 (A.thaliana) OTC_ARATH Ornithine carbamoyltransferase, chloroplast precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4759010/11Ornithine carbamoyltransferase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47560Os.19539.1.S1_at9/112+29053525..29056601DNA-binding protein SMUBP-2, putative, expressed
LOC_Os02g47560OsAffx.24767.1.S1_x_at3/112+29053525..29056601DNA-binding protein SMUBP-2, putative, expressed
LOC_Os02g47570Os.18777.1.S1_at10/112+29063588..29066254PAP2 superfamily protein, expressed
LOC_Os02g47580Os.7396.2.S1_a_at11/112+29066585..29070609expressed protein
LOC_Os02g47590Os.16681.1.S1_at10/112+29072491..29075389Ornithine carbamoyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47600Os.8567.1.S1_at10/112+29075952..29080833Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os02g47610Os.8713.1.S1_at11/112+29089118..29091582NmrA-like family protein, expressed
LOC_Os02g47620Os.11566.1.S1_at11/112+29093171..29095421hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g47630OsAffx.24768.1.S1_at11/112+29099537..29101181hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0016597molecular_functionamino acid binding
GO:0016743molecular_functioncarboxyl- and carbamoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16681.1.S1_at--136--8971Chr02:29074657..29074681 (25 bp)
TGAAATAACAGATGACCCTATGGAA
LOC_Os02g47590
Os.16681.1.S1_at--1046--2311NONE
AAAGTATTCCAAGGATTCACGGTGG
NONE
Os.16681.1.S1_at--599--591Chr02:29074967..29074991 (25 bp)
ATGCCTTCCTTATGCATTGTTTGCC
LOC_Os02g47590
Os.16681.1.S1_at--184--6451Chr02:29075004..29075028 (25 bp)
GATAGAGGTAACAGACGGCGCCATT
LOC_Os02g47590
Os.16681.1.S1_at--638--10751Chr02:29075027..29075051 (25 bp)
TTGAAGCTCCCAACTCAATCGTATT
LOC_Os02g47590
Os.16681.1.S1_at--57--911Chr02:29075057..29075081 (25 bp)
AGGCTGAGAACAGAATGCACGCCCA
LOC_Os02g47590
Os.16681.1.S1_at--684--1471Chr02:29075081..29075105 (25 bp)
AGAATGCTATCATGCTTCACGTCCT
LOC_Os02g47590
Os.16681.1.S1_at--645--6511Chr02:29075162..29075186 (25 bp)
GATATCATTTCGGTTTTCGCAGTTT
LOC_Os02g47590
Os.16681.1.S1_at--802--7011Chr02:29075267..29075291 (25 bp)
GTACTTTTCGTGGTAGCTGCTTGTA
LOC_Os02g47590
Os.16681.1.S1_at--238--3031Chr02:29075308..29075332 (25 bp)
AATCCTGAATAAATGGCGCACCTTT
LOC_Os02g47590
Os.16681.1.S1_at--333--4591Chr02:29075323..29075347 (25 bp)
GCGCACCTTTATAATCCATTTCCAA
LOC_Os02g47590
Target Sequence 
TGAAATAACAGATGACCCTATGGAANCAGTTAAGGGANCAGATGTTNGTGTATACAGATNTCTGGNCCAGCATGGGCCNA
AAGGAGGAANCTGAATATAGAAAAAAAGTATTCCAAGGATTCACGGTGGATGAAGCTATGATGGAGATGGCTGGGCCANA
ATGCCTTCCTTATGCATTGTTTGCCTGCAGAGAGAGGGATAGAGGTAACAGACGGCGCCATTGAAGCTCCCAACTCAATC
GTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTAGACCTACAGTCG
TGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCATTTCGGTTTTCGCAGTTTCTCCCTGGGGGCNNAGGAGG
GGTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAGC
TGCTTGTACTGTACCAGGTCGGTAAATCCTGAATAAATGGCGCACCTTTATAATCCATTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis