Browse Element(s) Details


Os.18777.1.S1_at

Description gb:AK059507.1
DB_XREF= gi:32969525
TID=Os.18777.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A12, full insert sequence.
FL= gb:AK061066.1 gb:AK059507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4757010/11PAP2 superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47540OsAffx.22947.1.S1_x_at11/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.3.S1_x_at5/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.2.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.5.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47550NANA2+29046402..29046770hypothetical protein
LOC_Os02g47560Os.19539.1.S1_at9/112+29053525..29056601DNA-binding protein SMUBP-2, putative, expressed
LOC_Os02g47560OsAffx.24767.1.S1_x_at3/112+29053525..29056601DNA-binding protein SMUBP-2, putative, expressed
LOC_Os02g47570Os.18777.1.S1_at10/112+29063588..29066254PAP2 superfamily protein, expressed
LOC_Os02g47580Os.7396.2.S1_a_at11/112+29066585..29070609expressed protein
LOC_Os02g47590Os.16681.1.S1_at10/112+29072491..29075389Ornithine carbamoyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47600Os.8567.1.S1_at10/112+29075952..29080833Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os02g47610Os.8713.1.S1_at11/112+29089118..29091582NmrA-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18777.1.S1_at--361--3071Chr02:29064986..29065010 (25 bp)
AATCTTTTCTCTATTCTGCGGTGTT
LOC_Os02g47570
Os.18777.1.S1_at--400--9491Chr02:29065000..29065024 (25 bp)
TCTGCGGTGTTTCTAATTCTTTCAT
LOC_Os02g47570
Os.18777.1.S1_at--1003--111NONE
ATTCTTTCATTGTTCTACTGGCTCG
NONE
Os.18777.1.S1_at--973--3911Chr02:29065548..29065572 (25 bp)
CTGGCTCGGGAGAACTTATCTGTCA
LOC_Os02g47570
Os.18777.1.S1_at--159--2991Chr02:29065599..29065775 (25 bp)
AATGTGCTGCTATCTTTCGTGGTTA
LOC_Os02g47570
Os.18777.1.S1_at--650--5431Chr02:29065802..29065826 (25 bp)
GAACCAGGTTCTTGTGGGTGCTATA
LOC_Os02g47570
Os.18777.1.S1_at--371--6451Chr02:29065831..29065855 (25 bp)
GATCAGCCTTTGGTGCTATGTGGTT
LOC_Os02g47570
Os.18777.1.S1_at--7--4571Chr02:29065857..29065881 (25 bp)
GCGCTTTTTAATTTGCTCGTGCAAG
LOC_Os02g47570
Os.18777.1.S1_at--1040--731Chr02:29065960..29065984 (25 bp)
ATGTCGTTCGCCACTGGTTCAAGGA
LOC_Os02g47570
Os.18777.1.S1_at--827--5291Chr02:29066056..29066080 (25 bp)
GAAGGCTCTGTATACTCTATGGGAA
LOC_Os02g47570
Os.18777.1.S1_at--57--6471Chr02:29066230..29066254 (25 bp)
GATAATGATGTCCTTGCTTTGCGTC
LOC_Os02g47570
Target Sequence 
AATCTTTTCTCTATTCTGCGGTGTTTCTAATTCTTTCATTGTTCTACTGGCTCGGGAGAACTTATCTGTCAGTTATTCTT
GGGGTTGCAATTCTAGCAATGTGCTGCTATCTTTCGTGGTTACGAGTGTCGCAGCNCCTCCATACACTGAACCAGGTTCT
TGTGGGTGCTATAGTAGGATCAGCCTTTGGTGCTATGTGGTTTGCGCTTTTTAATTTGCTCGTGCAAGAGGCGTNTGCTT
CTTCCGTACCGGTNCAGATNGCGGTGACTATCGGGACGGCAATATTATGCATCGGCTTTGTCATCCATGTCGTTCGCCAC
TGGTTCAAGGATGAGTGAATAGCAATATGAAATCGCAATGACCAATAGGTGATTGATTGAGACACAAAATCAACTGGTAA
CGGAAGGCTCTGTATACTCTATGGGAAGATCATACTGGAATTATTTGGGAGTGGGTTCGCAAGATAGTCACAGATAGCAA
CCTCAGTTCATTTTTTGGCATTTTTGCTGCAGGATAGTCACAGCACTGATTCTTGTAATACAGAACAGTTTATGCTTGAA
ATTTCTTCCACGAAATGATAATGATGTCCTTGCTTTGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis