Browse Element(s) Details


Os.8567.1.S1_at

Description gb:AF093629.1
DB_XREF= gi:3885881
GEN=IPP
TID=Os.8567.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.8567 (NCBI UniGene Cluster)
DEF=Oryza sativa inorganic pyrophosphatase (IPP) mRNA, complete cds.
PROD=inorganic pyrophosphatase
FL= gb:AK061019.1 gb:AF022733.1 gb:AK070562.1 gb:AK103984.1 gb:AF093629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4760010/11Soluble inorganic pyrophosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47560Os.19539.1.S1_at9/112+29053525..29056601DNA-binding protein SMUBP-2, putative, expressed
LOC_Os02g47560OsAffx.24767.1.S1_x_at3/112+29053525..29056601DNA-binding protein SMUBP-2, putative, expressed
LOC_Os02g47570Os.18777.1.S1_at10/112+29063588..29066254PAP2 superfamily protein, expressed
LOC_Os02g47580Os.7396.2.S1_a_at11/112+29066585..29070609expressed protein
LOC_Os02g47590Os.16681.1.S1_at10/112+29072491..29075389Ornithine carbamoyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47600Os.8567.1.S1_at10/112+29075952..29080833Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os02g47610Os.8713.1.S1_at11/112+29089118..29091582NmrA-like family protein, expressed
LOC_Os02g47620Os.11566.1.S1_at11/112+29093171..29095421hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g47630OsAffx.24768.1.S1_at11/112+29099537..29101181hypothetical protein
LOC_Os02g47640Os.51217.3.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47640Os.51217.2.S1_x_at11/112+29102646..29106195tubby, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016020cellular_componentmembrane
GO:0016462molecular_functionpyrophosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8567.1.S1_at--41--6291Chr02:29077144..29077168 (25 bp)
GATGTTTCCTGCGAGCTCGTGCTAT
LOC_Os02g47600
Os.8567.1.S1_at--282--7311Chr02:29077126..29077150 (25 bp)
GTGCTATTGGGCTCATGCCTATGAT
LOC_Os02g47600
Os.8567.1.S1_at--185--311Chr02:29076697..29076721 (25 bp)
ATACCGCCACTTCAGGGACATCAAG
LOC_Os02g47600
Os.8567.1.S1_at--78--6691Chr02:29076493..29076517 (25 bp)
GTTGCTGTCAATGAGTTTCTCCCAG
LOC_Os02g47600
Os.8567.1.S1_at--51--2851NONE
AAGTACTCCAATGGACCTCTTACGG
NONE
Os.8567.1.S1_at--413--1951Chr02:29076322..29076346 (25 bp)
ACGGCGCCTACATCATTGAGAGCTT
LOC_Os02g47600
Os.8567.1.S1_at--431--10631Chr02:29076300..29076321 (22 bp)
TTCGAGGAAGTGATCTCCAGCTGAT
LOC_Os02g47600
Os.8567.1.S1_at--557--2551Chr02:29076274..29076298 (25 bp)
AACTGCAGAGGCTACATGATTCACT
LOC_Os02g47600
Os.8567.1.S1_at--573--7671Chr02:29076187..29076211 (25 bp)
GGGATATATACCTTCTACTATTCAT
LOC_Os02g47600
Os.8567.1.S1_at--354--1751Chr02:29076144..29076168 (25 bp)
ACCTTTTCTTTCCATGTATGCCATG
LOC_Os02g47600
Os.8567.1.S1_at--164--10151Chr02:29076128..29076152 (25 bp)
TATGCCATGTCAGATACTCGGGTCC
LOC_Os02g47600
Target Sequence 
GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATCATAGCTGTT
TGTGCTGATGACCCTGAATACCGCCACTTCAGGGACATCAAGGAAATCCCCCCTCACCGCCTTCAAGAGATCCGCCGCTT
CTTTTGAAGACTACAAGAAGAATGAGAACAAAGAAGTTGCTGTCAATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCA
ATCAAGTACTCCAATGGACCTCTTACGGCGCCTACATCATTGAGAGCTTCGAGGAAGTGATCTCCAGCTGATCAACTGCA
GAGGCTACATGATTCACTGAACAGTTTCTCATCAATAGTACGACATATGTTAACATACATGGTCTAAAACCAGTACTTCG
GGGATATATACCTTCTACTATTCATGTTAAGACAAGAAGCAGCACCTTTTCTTTCCATGTATGCCATGTCAGATACTCGG
GTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis