Browse Element(s) Details


Os.7396.2.S1_a_at

Description gb:CB618720
DB_XREF= gi:29613707
DB_XREF=OSIIEa02N08.r
CLONE=OSIIEa02N08
TID=Os.7396.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7396 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566941.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4758011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47540OsAffx.22947.1.S1_x_at11/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.3.S1_x_at5/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.2.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.5.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47550NANA2+29046402..29046770hypothetical protein
LOC_Os02g47560Os.19539.1.S1_at9/112+29053525..29056601DNA-binding protein SMUBP-2, putative, expressed
LOC_Os02g47560OsAffx.24767.1.S1_x_at3/112+29053525..29056601DNA-binding protein SMUBP-2, putative, expressed
LOC_Os02g47570Os.18777.1.S1_at10/112+29063588..29066254PAP2 superfamily protein, expressed
LOC_Os02g47580Os.7396.2.S1_a_at11/112+29066585..29070609expressed protein
LOC_Os02g47590Os.16681.1.S1_at10/112+29072491..29075389Ornithine carbamoyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47600Os.8567.1.S1_at10/112+29075952..29080833Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os02g47610Os.8713.1.S1_at11/112+29089118..29091582NmrA-like family protein, expressed
LOC_Os02g47620Os.11566.1.S1_at11/112+29093171..29095421hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7396.2.S1_a_at--444--8651Chr02:29067112..29067136 (25 bp)
TGGGCTTGCAGTTACCCTTGGCACA
LOC_Os02g47580
Os.7396.2.S1_a_at--294--3611Chr02:29067096..29067120 (25 bp)
CTTGGCACAGCAGCCATTGCCTGGT
LOC_Os02g47580
Os.7396.2.S1_a_at--701--4531Chr02:29067052..29067076 (25 bp)
GCCCCAAGCCAGTCAAGACTCTAAT
LOC_Os02g47580
Os.7396.2.S1_a_at--646--5351Chr02:29067004..29067028 (25 bp)
GAAGATGTATCTTCTCGACCCTTCA
LOC_Os02g47580
Os.7396.2.S1_a_at--1157--9311Chr02:29066992..29067016 (25 bp)
TCTCGACCCTTCAGAAATCCTAACA
LOC_Os02g47580
Os.7396.2.S1_a_at--73--7411Chr02:29066905..29066929 (25 bp)
GTGATCACTGCAATCTTCATTCGCC
LOC_Os02g47580
Os.7396.2.S1_a_at--12--4531Chr02:29066883..29066907 (25 bp)
GCCGCTTCCTCTGTAAATGTCGAAT
LOC_Os02g47580
Os.7396.2.S1_a_at--392--8731Chr02:29066872..29066896 (25 bp)
TGTAAATGTCGAATGGGCCATCTCC
LOC_Os02g47580
Os.7396.2.S1_a_at--12--8491Chr02:29066838..29066862 (25 bp)
TGGCTCCATTCCCTCACAGTAAATC
LOC_Os02g47580
Os.7396.2.S1_a_at--795--7031Chr02:29066820..29066844 (25 bp)
GTAAATCCCTCTTTGCATAGTTGGT
LOC_Os02g47580
Os.7396.2.S1_a_at--249--3531Chr02:29066748..29066772 (25 bp)
CATGCAAACTCACTCCACTGGAGTT
LOC_Os02g47580
Target Sequence 
TGGGCTTGCAGTTACCCTTGGCACAGCAGCCATTGCCTGGTCCTACCTACCTGCAGCGCAGCCCCAAGCCAGTCAAGACT
CTAATACCAACAGCGATTAGAGCTAGATGAAGATGTATCTTCTCGACCCTTCAGAAATCCTAACAAGCTCTAACTATACA
ATCCTAGAGGAAAGAAAAGATTGTATAAGTTCTCTTTTGGTGATCGGCCGTGATCACTGCAATCTTCATTCGCCGCTTCC
TCTGTAAATGTCGAATGGGCCATCTCCTTACAGGACTGGCTCCATTCCCTCACAGTAAATCCCTCTTTGCATAGTTGGTT
GTGCAAAAATAATACGAGGAATGTGGATGGCTAGTAATCCATGGTCCATGCAAACTCACTCCACTGGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7396.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis