Browse Element(s) Details


Os.11566.1.S1_at

Description gb:AK063491.1
DB_XREF= gi:32973509
TID=Os.11566.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C10, full insert sequence.
FL= gb:AK063491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4762011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47580Os.7396.2.S1_a_at11/112+29066585..29070609expressed protein
LOC_Os02g47590Os.16681.1.S1_at10/112+29072491..29075389Ornithine carbamoyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47600Os.8567.1.S1_at10/112+29075952..29080833Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os02g47610Os.8713.1.S1_at11/112+29089118..29091582NmrA-like family protein, expressed
LOC_Os02g47620Os.11566.1.S1_at11/112+29093171..29095421hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g47630OsAffx.24768.1.S1_at11/112+29099537..29101181hypothetical protein
LOC_Os02g47640Os.51217.3.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47640Os.51217.2.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47650Os.53444.1.S1_at11/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47650Os.26133.1.S1_at9/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47660Os.7751.1.S1_at11/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g47660Os.50309.1.S1_at1/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0003913molecular_functionDNA photolyase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11566.1.S1_at--377--6751Chr02:29093722..29093746 (25 bp)
GTTCATGGCGAACCAGAGCCGGTAC
LOC_Os02g47620
Os.11566.1.S1_at--242--4491Chr02:29093705..29093729 (25 bp)
GCCGGTACACGCTGGACAGGCTGCT
LOC_Os02g47620
Os.11566.1.S1_at--610--3931Chr02:29093612..29093636 (25 bp)
CGGCGCAGATCAAGAAGTTCTACCA
LOC_Os02g47620
Os.11566.1.S1_at--830--3771Chr02:29093456..29093480 (25 bp)
CTCTCCAATCCGTGTGATCAACAAT
LOC_Os02g47620
Os.11566.1.S1_at--68--3031Chr02:29093414..29093438 (25 bp)
AATGCGATGTTCAAGTGTACTCCTA
LOC_Os02g47620
Os.11566.1.S1_at--428--2871Chr02:29093402..29093426 (25 bp)
AAGTGTACTCCTATAAGCTAGTTAA
LOC_Os02g47620
Os.11566.1.S1_at--998--7731Chr02:29093317..29093341 (25 bp)
GGTGTTTGTTACCTAGCTGACGAAC
LOC_Os02g47620
Os.11566.1.S1_at--207--10251Chr02:29093283..29093307 (25 bp)
TTTGAGAAATCCCTCGTTGCCATGC
LOC_Os02g47620
Os.11566.1.S1_at--130--6691Chr02:29093268..29093292 (25 bp)
GTTGCCATGCGAGATCCGCTCGAAA
LOC_Os02g47620
Os.11566.1.S1_at--313--6011Chr02:29093258..29093282 (25 bp)
GAGATCCGCTCGAAATTAGACAAAA
LOC_Os02g47620
Os.11566.1.S1_at--139--131Chr02:29093234..29093258 (25 bp)
ATTCAAACCGGAAGCTTCAATTCAT
LOC_Os02g47620
Target Sequence 
GTTCATGGCGAACCAGAGCCGGTACACGCTGGACAGGCTGCTGGGCAAGCTGTCGTGCCCGCTGCTGCTGCTGTGGGGGG
ACCTCGACCCGTGGGTCGGGCCGGCGAAGGCGGCGCAGATCAAGAAGTTCTACCAGGACACCACCGTCGTCAACCTCCAG
GCCGGCCATTGCCCCCACGACGAGGCGCCGGAGCAGTTCAACGGGGCGCTGCTCGAGTGGCTCGCCTCCCTCGACGCCGG
CAAGCCGGCGGATCAGCCGGAGCCCGCTCTCCAATCCGTGTGATCAACAATAAACCTGGAAGAGAAACAATGCGATGTTC
AAGTGTACTCCTATAAGCTAGTTAAAAATGATAAATAATTTACTAGTAGTGATTTTAGTTTATAGTGATCTATGTATAGT
GTTGGGGTGTTTGTTACCTAGCTGACGAACTTTTTTTTTTTTTGAGAAATCCCTCGTTGCCATGCGAGATCCGCTCGAAA
TTAGACAAAATTCAAACCGGAAGCTTCAATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis