Browse Element(s) Details


Os.8713.1.S1_at

Description gb:AK068080.1
DB_XREF= gi:32978098
TID=Os.8713.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132K15, full insert sequence.
FL= gb:AK104529.1 gb:AK068080.1 gb:AK106021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4761011/11NmrA-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47570Os.18777.1.S1_at10/112+29063588..29066254PAP2 superfamily protein, expressed
LOC_Os02g47580Os.7396.2.S1_a_at11/112+29066585..29070609expressed protein
LOC_Os02g47590Os.16681.1.S1_at10/112+29072491..29075389Ornithine carbamoyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47600Os.8567.1.S1_at10/112+29075952..29080833Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os02g47610Os.8713.1.S1_at11/112+29089118..29091582NmrA-like family protein, expressed
LOC_Os02g47620Os.11566.1.S1_at11/112+29093171..29095421hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g47630OsAffx.24768.1.S1_at11/112+29099537..29101181hypothetical protein
LOC_Os02g47640Os.51217.3.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47640Os.51217.2.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47650Os.53444.1.S1_at11/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47650Os.26133.1.S1_at9/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47660Os.7751.1.S1_at11/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g47660Os.50309.1.S1_at1/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8713.1.S1_at--1115--4831Chr02:29090208..29090232 (25 bp)
GCTAAATTCACGATCTGCACCATAG
LOC_Os02g47610
Os.8713.1.S1_at--826--3091Chr02:29090163..29090187 (25 bp)
AATACGCTGTATCTGAGACCCTCGG
LOC_Os02g47610
Os.8713.1.S1_at--304--5811Chr02:29090147..29090171 (25 bp)
GACCCTCGGGAAATGTCTACTCAAT
LOC_Os02g47610
Os.8713.1.S1_at--325--2471Chr02:29090121..29090145 (25 bp)
AACAAATTGGTTGACCTCTGGGAGA
LOC_Os02g47610
Os.8713.1.S1_at--961--2791Chr02:29089502..29089525 (24 bp)
AAGATGCACCATTGCCCTTGAAGAT
LOC_Os02g47610
Os.8713.1.S1_at--880--5471Chr02:29089403..29089427 (25 bp)
GAACTCAATTGTATCCTCATGTAAA
LOC_Os02g47610
Os.8713.1.S1_at--429--10771Chr02:29089326..29089350 (25 bp)
TTGTTTTTTCCTGTACTAGTACCAT
LOC_Os02g47610
Os.8713.1.S1_at--160--9971Chr02:29089307..29089331 (25 bp)
TACCATTCCTACCTCTATTAGTTAT
LOC_Os02g47610
Os.8713.1.S1_at--160--231Chr02:29089284..29089308 (25 bp)
ATATTACCTTTCATCTCTAGCCTAC
LOC_Os02g47610
Os.8713.1.S1_at--1056--6791Chr02:29089237..29089261 (25 bp)
GTTATTATTCTTGTATCTTGCCCAT
LOC_Os02g47610
Os.8713.1.S1_at--615--10671Chr02:29089220..29089244 (25 bp)
TTGCCCATAAACAATACCCTTCTGT
LOC_Os02g47610
Target Sequence 
GCTAAATTCACGATCTGCACCATAGATGATCCCAGGACATTAAACAATACGCTGTATCTGAGACCCTCGGGAAATGTCTA
CTCAATGAACAAATTGGTTGACCTCTGGGAGAAAAAAATAAATAAATTCCTGAACAAGATATATATCACAGAAGAACAAC
TCCTGAAAAACATTGAAGATGCACCATTGCCCTTGAAGATGGATTTGATATTTATATATTCAACATTTATTAAGGGTGAC
CAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTA
TTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTAC
CTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCT
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis