Browse Element(s) Details


Os.51217.3.S1_x_at

Description gb:AK106164.1
DB_XREF= gi:32991373
TID=Os.51217.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-B05, full insert sequence.
FL= gb:AK106164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4764011/11tubby, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47600Os.8567.1.S1_at10/112+29075952..29080833Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os02g47610Os.8713.1.S1_at11/112+29089118..29091582NmrA-like family protein, expressed
LOC_Os02g47620Os.11566.1.S1_at11/112+29093171..29095421hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g47630OsAffx.24768.1.S1_at11/112+29099537..29101181hypothetical protein
LOC_Os02g47640Os.51217.3.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47640Os.51217.2.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47650Os.53444.1.S1_at11/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47650Os.26133.1.S1_at9/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47660Os.7751.1.S1_at11/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g47660Os.50309.1.S1_at1/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g47670Os.11732.1.S1_a_at11/112+29129182..29135763U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51217.3.S1_x_at--168--2232Chr02:29104454..29104967 (25 bp)
ACAAGTTTTTGCTTGCAGCACGCAA
LOC_Os02g47640
Os.51217.3.S1_x_at--67--9151Chr02:29104977..29105001 (25 bp)
TGCGACCAGGACTTCTTTTGTGATC
LOC_Os02g47640
Os.51217.3.S1_x_at--747--10831Chr02:29104994..29105018 (25 bp)
TTGTGATCTCACTGGTCTCCAATGA
LOC_Os02g47640
Os.51217.3.S1_x_at--64--3011Chr02:29105014..29105038 (25 bp)
AATGACTTCTCTCTATCCAGTAGCA
LOC_Os02g47640
Os.51217.3.S1_x_at--144--10331Chr02:29105166..29105190 (25 bp)
TTTACAATCTTTGACAGCCAGCCTC
LOC_Os02g47640
Os.51217.3.S1_x_at--868--9231Chr02:29105189..29105213 (25 bp)
TCCTTGCGATGCTGTAGTGTTGCCA
LOC_Os02g47640
Os.51217.3.S1_x_at--623--2831Chr02:29105245..29105269 (25 bp)
AAGTATCACCGCGATTGCCACTAGG
LOC_Os02g47640
Os.51217.3.S1_x_at--1050--251Chr02:29105294..29105318 (25 bp)
ATATGAGCTCACTGTCCTACGTAAT
LOC_Os02g47640
Os.51217.3.S1_x_at--1054--411Chr02:29105406..29105430 (25 bp)
ATCATCCACTCACTTGACGAACAAG
LOC_Os02g47640
Os.51217.3.S1_x_at--1057--6691Chr02:29105430..29105454 (25 bp)
GTTCCCGCCTTATCAACTAGCAAAG
LOC_Os02g47640
Os.51217.3.S1_x_at--627--1751Chr02:29106120..29106144 (25 bp)
ACCTCCTTCCTTGATGCTATTTACA
LOC_Os02g47640
Target Sequence 
ACAAGTTTTTGCTTGCAGCACGCAAGATTAGGCGTGCGACCAGGACTTCTTTTGTGATCTCACTGGTCTCCAATGACTTC
TCTCTATCCAGTAGCACCTATGTTGGTAAACTGAAACCAAACTTCCTTGGCACAAAGTTTACAATCTTTGACAGCCAGCC
TCCTTGCGATGCTGTAGTGTTGCCAAACAACCGACCAAGCAAACGACATTTCAAGCAAGTATCACCGCGATTGCCACTAG
GCAATTACAATGTTGCTACGGTCTCATATGAGCTCACTGTCCTACGTAATCGAGGACCAAGGAGAATGCAATGCACCATG
CACTCTATACCGGCATTGTGTATTCAGGAAGGTGGGAAGGCCCCAACCCCTACCGGCATCATCCACTCACTTGACGAACA
AGTTCCCGCCTTATCAACTAGCAAAGGAAAGGAACCAGCCATAGAATTTTTGCTATTGTACTATTGTTCTTGGAATGTTT
AGCGGTGAAATATCACTGCGCTATGGATAATATGGACGCTGTTCATCGTGCCCTACCTCCTTCCTTGATGCTATTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51217.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis