Browse Element(s) Details


Os.11771.1.S1_at

Description gb:AK107472.1
DB_XREF= gi:32992681
TID=Os.11771.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B05, full insert sequence.
FL= gb:AK107472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1232011/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12320Os.11771.1.S1_at11/116+6677246..6679863Transmembrane amino acid transporter protein, expressed
LOC_Os06g12330Os.54785.1.S1_at11/116+6681438..6684948amino acid carrier, putative, expressed
LOC_Os06g12340OsAffx.15385.1.S1_at11/116+6685570..6686307hypothetical protein
LOC_Os06g12350Os.54811.1.S1_at11/116+6690065..6694064Transmembrane amino acid transporter protein, expressed
LOC_Os06g12360OsAffx.15386.1.S1_at11/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12360OsAffx.27652.1.S1_x_at1/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12370Os.51794.1.S1_x_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12370Os.51794.1.S1_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11771.1.S1_at--805--9051Chr06:6679519..6679543 (25 bp)
TGCTACCTCCGGATCAGCTCCAGGG
LOC_Os06g12320
Os.11771.1.S1_at--438--3531Chr06:6679590..6679614 (25 bp)
CATCGTGCTTGGGTTAGGAGTGATC
LOC_Os06g12320
Os.11771.1.S1_at--353--3991Chr06:6679614..6679638 (25 bp)
CGTGATAGGCACTTACAGCTCGCTG
LOC_Os06g12320
Os.11771.1.S1_at--118--9871Chr06:6679627..6679651 (25 bp)
TACAGCTCGCTGAAACAGATTGTGC
LOC_Os06g12320
Os.11771.1.S1_at--1104--3431Chr06:6679642..6679666 (25 bp)
CAGATTGTGCAGAGCTTCTGATCAT
LOC_Os06g12320
Os.11771.1.S1_at--988--5911Chr06:6679653..6679677 (25 bp)
GAGCTTCTGATCATTTATGGGCAAA
LOC_Os06g12320
Os.11771.1.S1_at--726--5951Chr06:6679691..6679715 (25 bp)
GAGCAATTGGGATCAGCTACTGAAA
LOC_Os06g12320
Os.11771.1.S1_at--601--10051Chr06:6679728..6679752 (25 bp)
TAGTCAATTCGATACCACTGATTAG
LOC_Os06g12320
Os.11771.1.S1_at--870--7491Chr06:6679758..6679782 (25 bp)
GTGGTGTCAACCATGATGTTATGCA
LOC_Os06g12320
Os.11771.1.S1_at--8--5991Chr06:6679793..6679817 (25 bp)
GAGAAAGAAATCCATATGCCGTGTA
LOC_Os06g12320
Os.11771.1.S1_at--1037--3571Chr06:6679805..6679829 (25 bp)
CATATGCCGTGTATTCAGGTAGGAA
LOC_Os06g12320
Target Sequence 
TGCTACCTCCGGATCAGCTCCAGGGCCTCCNGGGAAGCTGGGGGTGCNCGAGATCGTGGCTTGCGTGGGGATCATCGTGC
TTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGCTTCTGATCATTTATGGGCAAA
GGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAATTGACATATACTAGTCAATTCGATACCACTGATTAGGACAG
GTGGTGTCAACCATGATGTTATGCATAAATCACTTGAGAAAGAAATCCATATGCCGTGTATTCAGGTAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis