Browse Element(s) Details


OsAffx.15385.1.S1_at

Description tigr:9634.m01214
TID=OsAffx.15385.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1234011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12320Os.11771.1.S1_at11/116+6677246..6679863Transmembrane amino acid transporter protein, expressed
LOC_Os06g12330Os.54785.1.S1_at11/116+6681438..6684948amino acid carrier, putative, expressed
LOC_Os06g12340OsAffx.15385.1.S1_at11/116+6685570..6686307hypothetical protein
LOC_Os06g12350Os.54811.1.S1_at11/116+6690065..6694064Transmembrane amino acid transporter protein, expressed
LOC_Os06g12360OsAffx.15386.1.S1_at11/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12360OsAffx.27652.1.S1_x_at1/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12370Os.51794.1.S1_x_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12370Os.51794.1.S1_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15385.1.S1_at--641--2591Chr06:6686129..6686153 (25 bp)
AACGACAACGACTAGGAGGGCGACT
LOC_Os06g12340
OsAffx.15385.1.S1_at--621--3191Chr06:6685957..6685981 (25 bp)
CAATGAGGCGGATCTGCAGATGGTT
LOC_Os06g12340
OsAffx.15385.1.S1_at--515--7971Chr06:6685948..6685972 (25 bp)
GGATCTGCAGATGGTTCAACGACGA
LOC_Os06g12340
OsAffx.15385.1.S1_at--25--1391Chr06:6685921..6685945 (25 bp)
AGACTTGGGCGATAGATCCGACAGC
LOC_Os06g12340
OsAffx.15385.1.S1_at--1023--4051Chr06:6685894..6685918 (25 bp)
CGAGGCGCGCCAACACTGGATCTAT
LOC_Os06g12340
OsAffx.15385.1.S1_at--840--2471Chr06:6685883..6685907 (25 bp)
AACACTGGATCTATCGGCTGCGGTG
LOC_Os06g12340
OsAffx.15385.1.S1_at--695--9111Chr06:6685820..6685844 (25 bp)
TGCTGCTCCTCATTCTGAACGGGAA
LOC_Os06g12340
OsAffx.15385.1.S1_at--813--7731Chr06:6685781..6685805 (25 bp)
GGTGGTGGCTTTCGGTGTCGAGCAA
LOC_Os06g12340
OsAffx.15385.1.S1_at--486--3651Chr06:6685728..6685752 (25 bp)
CTTCTCGCTCCGAACAGGGAGGACG
LOC_Os06g12340
OsAffx.15385.1.S1_at--920--1111Chr06:6685678..6685702 (25 bp)
AGTGATGCTTCTCCTCTTTGATCCG
LOC_Os06g12340
OsAffx.15385.1.S1_at--591--4911Chr06:6685672..6685696 (25 bp)
GCTTCTCCTCTTTGATCCGAATGAG
LOC_Os06g12340
Target Sequence 
AACGACAACGACTAGGAGGGCGACTGGCGGGCGAGCAGTGGAGCGGAGGAGCCCAAGTGGGGGGAGCGGTGGTGGCGGCG
GCATGCGGGAGGGCGAGCGGAGGGAGCGATGGTGGCAGCAGCGGCAATGAGGCGGATCTGCAGATGGTTCAACGACGAGG
AGACTTGGGCGATAGATCCGACAGCGCCGAGGCGCGCCAACACTGGATCTATCGGCTGCGGTGGTGTTCGGCGTCGGGGA
AGGAGAGGACAGTGGTGGCGGTGCTGCTCCTCATTCTGAACGGGAAGGACAGCGGGTGGCGGTGGTGGCTTTCGGTGTCG
AGCAAGGAGAGGACGGAGGCAGCGGCGCTGCTTCTTCTCGCTCCGAACAGGGAGGACGGTGACGCGGTAGAAGGCTGTGG
GGCAGTGATGCTTCTCCTCTTTGATCCGAATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis