Browse Element(s) Details


Os.54785.1.S1_at

Description gb:AK106762.1
DB_XREF= gi:32991971
TID=Os.54785.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E07, full insert sequence.
FL= gb:AK106762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1233011/11amino acid carrier, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12320Os.11771.1.S1_at11/116+6677246..6679863Transmembrane amino acid transporter protein, expressed
LOC_Os06g12330Os.54785.1.S1_at11/116+6681438..6684948amino acid carrier, putative, expressed
LOC_Os06g12340OsAffx.15385.1.S1_at11/116+6685570..6686307hypothetical protein
LOC_Os06g12350Os.54811.1.S1_at11/116+6690065..6694064Transmembrane amino acid transporter protein, expressed
LOC_Os06g12360OsAffx.15386.1.S1_at11/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12360OsAffx.27652.1.S1_x_at1/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12370Os.51794.1.S1_x_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12370Os.51794.1.S1_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0015810biological_processL-aspartate transport
GO:0015827biological_processL-tryptophan transport
GO:0005886cellular_componentplasma membrane
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54785.1.S1_at--69--8851Chr06:6681873..6681897 (25 bp)
TGATCAGCGTGAACGCGTTCAGGCT
LOC_Os06g12330
Os.54785.1.S1_at--194--9431Chr06:6681645..6681669 (25 bp)
TCGTGGTGACGCTCGCCTCAGCGGT
LOC_Os06g12330
Os.54785.1.S1_at--536--7971Chr06:6681606..6681630 (25 bp)
GGATCGCCGAATCGATGGCGCACTA
LOC_Os06g12330
Os.54785.1.S1_at--1052--6211Chr06:6681593..6681617 (25 bp)
GATGGCGCACTATGTACCGTTCAAG
LOC_Os06g12330
Os.54785.1.S1_at--1025--731Chr06:6681582..6681606 (25 bp)
ATGTACCGTTCAAGTCAAAGTTGTA
LOC_Os06g12330
Os.54785.1.S1_at--759--2571Chr06:6681542..6681566 (25 bp)
AACGGTCTATGCACCATTTGCTGTT
LOC_Os06g12330
Os.54785.1.S1_at--689--9791Chr06:6681518..6681542 (25 bp)
TAACCTGATAGGAATGTGACCGTAC
LOC_Os06g12330
Os.54785.1.S1_at--159--1791Chr06:6681500..6681524 (25 bp)
ACCGTACGAGTACTTTGAGATTCAT
LOC_Os06g12330
Os.54785.1.S1_at--590--8891Chr06:6681485..6681509 (25 bp)
TGAGATTCATGCTGGACAACAAAAC
LOC_Os06g12330
Os.54785.1.S1_at--179--3251Chr06:6681466..6681490 (25 bp)
CAAAACCCAAAGAGAGTTGCTACAA
LOC_Os06g12330
Os.54785.1.S1_at--673--6673Chr01:13030125..13030149 (25 bp)
GTTGCTACAAAACAGGATCCCGTTG
NONE
Target Sequence 
TGATCAGCGTGAACGCGTTCAGGCTCGCGTGGCGCACGGCGTACGTCGTGGCGTGCACCGCGGTCGCCGCCGTGGTGCCG
TTCTTCAACGACGTGCTCGGCCTCCTCGGCGCCGTCGGGTTCTGGCCGCTCACCGTGTACTTCCCCGTGGAGATGTACAT
CCGGCGGCGGAAGCTGGAGAGGTCGTCCAAGAGGTGGGTGGCGCTGCAGAGCCTCAACGCCGTGTGCTTCGTGGTGACGC
TCGCCTCAGCGGTCGCGTCCGTGCAGGGGATCGCCGAATCGATGGCGCACTATGTACCGTTCAAGTCAAAGTTGTAAAGG
AAAAAAAAAAGAACGGTCTATGCACCATTTGCTGTTAACCTGATAGGAATGTGACCGTACGAGTACTTTGAGATTCATGC
TGGACAACAAAACCCAAAGAGAGTTGCTACAAAACAGGATCCCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis