Browse Element(s) Details


Os.54811.1.S1_at

Description gb:AK106814.1
DB_XREF= gi:32992023
TID=Os.54811.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D01, full insert sequence.
FL= gb:AK106814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1235011/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12320Os.11771.1.S1_at11/116+6677246..6679863Transmembrane amino acid transporter protein, expressed
LOC_Os06g12330Os.54785.1.S1_at11/116+6681438..6684948amino acid carrier, putative, expressed
LOC_Os06g12340OsAffx.15385.1.S1_at11/116+6685570..6686307hypothetical protein
LOC_Os06g12350Os.54811.1.S1_at11/116+6690065..6694064Transmembrane amino acid transporter protein, expressed
LOC_Os06g12360OsAffx.15386.1.S1_at11/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12360OsAffx.27652.1.S1_x_at1/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12370Os.51794.1.S1_x_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12370Os.51794.1.S1_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12380OsAffx.18105.2.A1_at11/116+6711479..6712222hypothetical protein
LOC_Os06g12390Os.49253.1.S1_at11/116+6715188..6720901Galactoside-binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0015810biological_processL-aspartate transport
GO:0015827biological_processL-tryptophan transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54811.1.S1_at--97--1151Chr06:6690607..6690631 (25 bp)
AGTCCAGGCTCGTCACGGCCAGCTA
LOC_Os06g12350
Os.54811.1.S1_at--132--7391Chr06:6690389..6690413 (25 bp)
GTGAGCATGCACATCGCGAGGGTCA
LOC_Os06g12350
Os.54811.1.S1_at--1095--2091Chr06:6690379..6690403 (25 bp)
ACATCGCGAGGGTCAAGATCCGGAG
LOC_Os06g12350
Os.54811.1.S1_at--717--4091Chr06:6690270..6690294 (25 bp)
CGACATGGTGCAGAGGTTGAACGAA
LOC_Os06g12350
Os.54811.1.S1_at--880--4771Chr06:6690242..6690266 (25 bp)
GCTCCCTTCAAGACCACGGGCTAAA
LOC_Os06g12350
Os.54811.1.S1_at--831--8291Chr06:6690224..6690248 (25 bp)
GGCTAAACTAATTTACCGAGTGCTT
LOC_Os06g12350
Os.54811.1.S1_at--955--5591Chr06:6690197..6690221 (25 bp)
GAAATTTATTACGATCACTTACATA
LOC_Os06g12350
Os.54811.1.S1_at--255--2931Chr06:6690166..6690190 (25 bp)
AAGGACGTGACTACGATGAGACCGT
LOC_Os06g12350
Os.54811.1.S1_at--720--5972Chr11:19781227..19781535 (25 bp)
GAGACCGTAAGCTGGATTGTCATAA
NONE
Os.54811.1.S1_at--703--391Chr06:6690125..6690149 (25 bp)
ATCAGCGACTTCAATCTCATATCCA
LOC_Os06g12350
Os.54811.1.S1_at--819--3751Chr06:6690110..6690134 (25 bp)
CTCATATCCAGTTGCTATTAGTACA
LOC_Os06g12350
Target Sequence 
AGTCCAGGCTCGTCACGGCCAGCTACGAGCTCCGCCTCCGCGTGCCGGCGTGGACGTCCGCGCCGCCGACGGCCGTGACA
CTGTCGCCGGCGAGGATGGCGCTGCGGGCGGCGGTGATCGTGGCGACGACGGCGGTGGCGGCGATGATGCCGTTCTTCAA
CGCCGTGCTGGGCTTCATCGCCGCGCTCGGGTTCTGGCCGCTCGCCGTCTACCTCCCGGTGAGCATGCACATCGCGAGGG
TCAAGATCCGGAGGGGGGAGGCGCGGTGGTGGGCGCTGCAGGGCGCGAGCGCGGCGCTGCTCGTCGTCGCCGTCGGCATG
GGCGTCGCGTCCGTGCGCGACATGGTGCAGAGGTTGAACGAAGCTGCTCCCTTCAAGACCACGGGCTAAACTAATTTACC
GAGTGCTTTAGAAATTTATTACGATCACTTACATAATTGATAAGGACGTGACTACGATGAGACCGTAAGCTGGATTGTCA
TAATCAGCGACTTCAATCTCATATCCAGTTGCTATTAGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis