Browse Element(s) Details


OsAffx.18105.2.A1_at

Description tigr:9634.m01218
TID=OsAffx.18105.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1238011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12350Os.54811.1.S1_at11/116+6690065..6694064Transmembrane amino acid transporter protein, expressed
LOC_Os06g12360OsAffx.15386.1.S1_at11/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12360OsAffx.27652.1.S1_x_at1/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12370Os.51794.1.S1_x_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12370Os.51794.1.S1_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12380OsAffx.18105.2.A1_at11/116+6711479..6712222hypothetical protein
LOC_Os06g12390Os.49253.1.S1_at11/116+6715188..6720901Galactoside-binding lectin family protein, expressed
LOC_Os06g12400Os.17425.1.S1_at11/116+6724321..6733446PHD-finger family protein, expressed
LOC_Os06g12410Os.9333.1.A1_s_at11/116+6735134..6736797GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18105.2.A1_at--591--1491Chr06:6711672..6711696 (25 bp)
AGCACCGCCAGGACGTTGTTGAGCA
LOC_Os06g12380
OsAffx.18105.2.A1_at--47--4231Chr06:6711733..6711757 (25 bp)
CCGCGGCGAACGACAAATGCAACAA
LOC_Os06g12380
OsAffx.18105.2.A1_at--528--2411Chr06:6711756..6711780 (25 bp)
AAACAACTCTTGCATCTGAAATCAA
LOC_Os06g12380
OsAffx.18105.2.A1_at--1129--3471Chr06:6711781..6711805 (25 bp)
CAGGATTGGTGAACGTCTGAATGAC
LOC_Os06g12380
OsAffx.18105.2.A1_at--58--9651Chr06:6711845..6711869 (25 bp)
TCAGTACACAATACGGACGCTCTCT
LOC_Os06g12380
OsAffx.18105.2.A1_at--873--1831Chr06:6711861..6711885 (25 bp)
ACGCTCTCTGGCCACCACAGGTGGT
LOC_Os06g12380
OsAffx.18105.2.A1_at--44--4911Chr06:6711896..6711920 (25 bp)
GCTTCCATCCAGTGTATTCTAGTCG
LOC_Os06g12380
OsAffx.18105.2.A1_at--203--10071Chr06:6711915..6711939 (25 bp)
TAGTCGAACACGAACATCTCACCGT
LOC_Os06g12380
OsAffx.18105.2.A1_at--1084--1751Chr06:6711935..6711959 (25 bp)
ACCGTCGCCAGGAGAGGACACGCCG
LOC_Os06g12380
OsAffx.18105.2.A1_at--866--3951Chr06:6712015..6712039 (25 bp)
CGGAGACGAGCAATATTGCGGCGCA
LOC_Os06g12380
OsAffx.18105.2.A1_at--755--9791Chr06:6712158..6712182 (25 bp)
TAACTGGGCACGTCGACGATGCCGT
LOC_Os06g12380
Target Sequence 
AGCACCGCCAGGACGTTGTTGAGCAGGACCGACGACGCCGACGAGTCACTCGACTCACTCGCCGCGGCGAACGACAAATG
CAACAAACAACTCTTGCATCTGAAATCAACAGGATTGGTGAACGTCTGAATGACAAAGTTAAATCAGTACACAAAACTCA
GTACAAAGTTAAATCAGTACACAATACGGACGCTCTCTGGCCACCACAGGTGGTGGCTGCCGTCGCTTCCATCCAGTGTA
TTCTAGTCGAACACGAACATCTCACCGTCGCCAGGAGAGGACACGCCGCCGCCGGCGATGCTTTCAGCTCCTCCCTGTCC
ACCGGGCTTGCTGTCTCCGGTGCCGGAGACGAGCAATATTGCGGCGCAGGGAGGGGTGATGCGGGAAGGCGGCGAGGAGG
GAGGTTGTTGGCGACGCACCATGCCTGGATGACGCGGCGGAGGGCATGGTTGGGGACAAGGTCGTCGGTGCGAAGGTCAC
CTTTGGTAACTGGGCACGTCGACGATGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18105.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis