Browse Element(s) Details


Os.9333.1.A1_s_at

Description gb:BE041000
DB_XREF= gi:8336645
DB_XREF=OF16B05
TID=Os.9333.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9333 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177586.1 (A.thaliana) putative lipaseacylhydrolase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1241011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12380OsAffx.18105.2.A1_at11/116+6711479..6712222hypothetical protein
LOC_Os06g12390Os.49253.1.S1_at11/116+6715188..6720901Galactoside-binding lectin family protein, expressed
LOC_Os06g12400Os.17425.1.S1_at11/116+6724321..6733446PHD-finger family protein, expressed
LOC_Os06g12410Os.9333.1.A1_s_at11/116+6735134..6736797GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g12430OsAffx.15388.1.S1_at11/116+6740343..6740946hypothetical protein
LOC_Os06g12440OsAffx.28657.2.S1_at11/116+6742784..6743850Protease inhibitor/seed storage/LTP family protein
LOC_Os06g12450Os.5738.1.S1_at11/116+6747359..6752337Soluble starch synthase 2-3, chloroplast precursor, putative, expressed
LOC_Os06g12460OsAffx.15389.1.S1_at11/116+6757182..6761996glycosyltransferase 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9333.1.A1_s_at--105--1851Chr06:6736426..6736450 (25 bp)
ACGACTACTTCCAGGACATCATCGA
LOC_Os06g12410
Os.9333.1.A1_s_at--983--2011Chr06:6736429..6736453 (25 bp)
ACTACTTCCAGGACATCATCGACCG
LOC_Os06g12410
Os.9333.1.A1_s_at--1095--4571Chr06:6736461..6736485 (25 bp)
GCGCACGGGTTCAACAACTCGCGGG
LOC_Os06g12410
Os.9333.1.A1_s_at--894--7651Chr06:6736467..6736491 (25 bp)
GGGTTCAACAACTCGCGGGCGCCGT
LOC_Os06g12410
Os.9333.1.A1_s_at--496--1831Chr06:6736530..6736554 (25 bp)
ACGCCGCTGTCCACGCTGTGCAAGG
LOC_Os06g12410
Os.9333.1.A1_s_at--1002--1831Chr06:6736542..6736566 (25 bp)
ACGCTGTGCAAGGACCGGAGCCAGT
LOC_Os06g12410
Os.9333.1.A1_s_at--837--4811Chr06:6736549..6736573 (25 bp)
GCAAGGACCGGAGCCAGTACGTGTT
LOC_Os06g12410
Os.9333.1.A1_s_at--583--2551Chr06:6736662..6736686 (25 bp)
AACTCCACCTCAACCTAGCTAAGTA
LOC_Os06g12410
Os.9333.1.A1_s_at--334--311Chr06:6736668..6736692 (25 bp)
ACCTCAACCTAGCTAAGTAGTAGTA
LOC_Os06g12410
Os.9333.1.A1_s_at--601--6911Chr06:6736702..6736726 (25 bp)
GTAGTATATTGGTTCAACGTACGTT
LOC_Os06g12410
Os.9333.1.A1_s_at--637--8771Chr06:6736738..6736762 (25 bp)
TGTTTTGGTTCGTACAAACATTGTA
LOC_Os06g12410
Target Sequence 
ACGACTACTTCCAGGACATCATCGACCGCCCCGCGGCGCACGGGTTCAACAACTCGCGGGCGCCGTGCTGCTCGCTGGGG
CGGGTGCGGCCGACGCTGACGTGCACGCCGCTGTCCACGCTGTGCAAGGACCGGAGCCAGTACGTGTTCTGGGACGAGTA
CCACNNCACCGACCGCGCCAACGAGCTCATCGCGCTCGAGACGCTCCGCAAGCTCAACATCACCGTCTCCGCCAACAACT
CCACCTCAACCTAGCTAAGTAGTAGTAGTAGAACTAGTAGTATATTGGTTCAACGTACGTTNTCAGCGTTTTTGTTTTGG
TTCGTACAAACATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9333.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis