Browse Element(s) Details


Os.5738.1.S1_at

Description gb:AF419099.1
DB_XREF= gi:16265833
TID=Os.5738.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5738 (NCBI UniGene Cluster)
DEF=Oryza sativa putative soluble starch synthase II-3 mRNA, complete cds.
PROD=putative soluble starch synthase II-3
FL= gb:AF419099.1 gb:AK101978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1245011/11Soluble starch synthase 2-3, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12400Os.17425.1.S1_at11/116+6724321..6733446PHD-finger family protein, expressed
LOC_Os06g12410Os.9333.1.A1_s_at11/116+6735134..6736797GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g12430OsAffx.15388.1.S1_at11/116+6740343..6740946hypothetical protein
LOC_Os06g12440OsAffx.28657.2.S1_at11/116+6742784..6743850Protease inhibitor/seed storage/LTP family protein
LOC_Os06g12450Os.5738.1.S1_at11/116+6747359..6752337Soluble starch synthase 2-3, chloroplast precursor, putative, expressed
LOC_Os06g12460OsAffx.15389.1.S1_at11/116+6757182..6761996glycosyltransferase 5, putative, expressed
LOC_Os06g12470Os.33878.1.S1_at6/116+6763464..6771922expressed protein
LOC_Os06g12470OsAffx.21953.1.S1_at2/116+6763464..6771922expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010021biological_processamylopectin biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009011molecular_functionstarch synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5738.1.S1_at--58--4251Chr06:6751734..6751758 (25 bp)
CCGTCGGCGGGCTGAGGGACACCAT
LOC_Os06g12450
Os.5738.1.S1_at--619--6131Chr06:6751747..6751771 (25 bp)
GAGGGACACCATGTCGGCGTTCGAC
LOC_Os06g12450
Os.5738.1.S1_at--985--5351Chr06:6751980..6752004 (25 bp)
GAAGAGACCATGTCCGCCCGCGGTC
LOC_Os06g12450
Os.5738.1.S1_at--509--1451Chr06:6752046..6752070 (25 bp)
AGAAGCTTGGCGCTGCTGTGGAGGT
LOC_Os06g12450
Os.5738.1.S1_at--119--8671Chr06:6752062..6752086 (25 bp)
TGTGGAGGTGCGACTCGGTGGCGGT
LOC_Os06g12450
Os.5738.1.S1_at--60--10831Chr06:6752121..6752145 (25 bp)
TTGTGCTGACCGAGCTGTGCGTTGA
LOC_Os06g12450
Os.5738.1.S1_at--825--1611Chr06:6752133..6752157 (25 bp)
AGCTGTGCGTTGAGGTGCGCAAATT
LOC_Os06g12450
Os.5738.1.S1_at--619--7291Chr06:6752137..6752161 (25 bp)
GTGCGTTGAGGTGCGCAAATTAGCT
LOC_Os06g12450
Os.5738.1.S1_at--638--7431Chr06:6752264..6752288 (25 bp)
GTGTTTGTTATGTCCATTGATGCGA
LOC_Os06g12450
Os.5738.1.S1_at--943--7251Chr06:6752275..6752299 (25 bp)
GTCCATTGATGCGATGTTACTTCTT
LOC_Os06g12450
Os.5738.1.S1_at--922--51Chr06:6752279..6752303 (25 bp)
ATTGATGCGATGTTACTTCTTCATT
LOC_Os06g12450
Target Sequence 
CCGTCGGCGGGCTGAGGGACACCATGTCGGCGTTCGACCCGTTCGAGGACACCGGCCTCGGGTGGACGTTCGACCGCGCC
GAGCCGCACAAGCTCATCGAGGCGCTCGGCCANNTGCNTCGNAGACGTACCGCAAGTACAANGGAGAGCTGGAGGGGNNT
CCAGGTGCNCGGCATGTCGCAGGACCTCAGCTGGGACCACGCCGCCGAGCTCTACGAGGAGGTCCTTGTCAAGGCCAAGT
ACCAATGGTGAAGAGACCATGTCCGCCCGCGGTCTCCGCCTGCGCGTTCGGCAGCTATAGCTATAGCCTCCCTGAAGAAG
CTTGGCGCTGCTGTGGAGGTGCGACTCGGTGGCGGTGTGGCGCCGGCGCCGGCGCTTGCAGGGGAGGTGTTTGTGCTGAC
CGAGCTGTGCGTTGAGGTGCGCAAATTAGCTTCCGGTTTGTGTGTTCATGGCGAGGCATGGTGGAGTTGAGGGAGTATTA
AGCTTTGTTTCAGATGCATCATGCATGCGTAATAGGATGTTGTATTTAATAATGTGTTTGTTATGTCCATTGATGCGATG
TTACTTCTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis