Browse Element(s) Details


OsAffx.28657.2.S1_at

Description tigr:9634.m01224
TID=OsAffx.28657.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protease inhibitorseed storageLTP family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1244011/11Protease inhibitor/seed storage/LTP family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12390Os.49253.1.S1_at11/116+6715188..6720901Galactoside-binding lectin family protein, expressed
LOC_Os06g12400Os.17425.1.S1_at11/116+6724321..6733446PHD-finger family protein, expressed
LOC_Os06g12410Os.9333.1.A1_s_at11/116+6735134..6736797GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g12430OsAffx.15388.1.S1_at11/116+6740343..6740946hypothetical protein
LOC_Os06g12440OsAffx.28657.2.S1_at11/116+6742784..6743850Protease inhibitor/seed storage/LTP family protein
LOC_Os06g12450Os.5738.1.S1_at11/116+6747359..6752337Soluble starch synthase 2-3, chloroplast precursor, putative, expressed
LOC_Os06g12460OsAffx.15389.1.S1_at11/116+6757182..6761996glycosyltransferase 5, putative, expressed
LOC_Os06g12470Os.33878.1.S1_at6/116+6763464..6771922expressed protein
LOC_Os06g12470OsAffx.21953.1.S1_at2/116+6763464..6771922expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28657.2.S1_at--938--2271Chr06:6742992..6743016 (25 bp)
AAATCCCATGTCTTCCTCCATTGCA
LOC_Os06g12440
OsAffx.28657.2.S1_at--1138--711Chr06:6742999..6743023 (25 bp)
ATGTCTTCCTCCATTGCAACCACTT
LOC_Os06g12440
OsAffx.28657.2.S1_at--977--71Chr06:6743095..6743119 (25 bp)
ATTGCCACCACTACTGCCGTCAGTT
LOC_Os06g12440
OsAffx.28657.2.S1_at--224--2031Chr06:6743104..6743128 (25 bp)
ACTACTGCCGTCAGTTTCCATCACA
LOC_Os06g12440
OsAffx.28657.2.S1_at--1126--7651Chr06:6743131..6743155 (25 bp)
GGGATCATCAGGTGCACCAGTACAA
LOC_Os06g12440
OsAffx.28657.2.S1_at--260--9851Chr06:6743151..6743175 (25 bp)
TACAAGTCCCCAATAGCTCCCAGAG
LOC_Os06g12440
OsAffx.28657.2.S1_at--967--8851Chr06:6743241..6743265 (25 bp)
TGATGCCGTGCGTGGAGTATGCCAC
LOC_Os06g12440
OsAffx.28657.2.S1_at--708--8551Chr06:6743253..6743277 (25 bp)
TGGAGTATGCCACCAAGACCGATGT
LOC_Os06g12440
OsAffx.28657.2.S1_at--122--3751Chr06:6743396..6743420 (25 bp)
CTCACACGCATGATGTCTCTTCCAG
LOC_Os06g12440
OsAffx.28657.2.S1_at--149--9531Chr06:6743411..6743435 (25 bp)
TCTCTTCCAGCCACCTGCGGTGTGA
LOC_Os06g12440
OsAffx.28657.2.S1_at--105--7471Chr06:6743430..6743454 (25 bp)
GTGTGACCCCTCCTGTCGAGGCTCT
LOC_Os06g12440
Target Sequence 
AAATCCCATGTCTTCCTCCATTGCAACCACTTCCGACAATCCAAATCCCAGGGCTTCCACAACTGCAGCCACTTCCAACG
ATCCAAATCCCAGAGCTTCCGCCATTGCCACCACTACTGCCGTCAGTTTCCATCACACCGGGATCATCAGGTGCACCAGT
ACAAGTCCCCAATAGCTCCCAGAGCGCACTGGCAGTGGCAGCGCCTATCACACCACAGCCGACGGAGTGCTTGTCGTCGC
TGATGGCACTGATGCCGTGCGTGGAGTATGCCACCAAGACCGATGTGCCGGCTCCGCCAAGCGTCTGCTGCGACGGCTTC
AAGTCGCTCGTGGAGATGGCGCCCATCTGCCTCTGCCACGGCATCAACGGCAACATCGGCAAGTTCATGCCGGCGCCCAT
CGATCTCACACGCATGATGTCTCTTCCAGCCACCTGCGGTGTGACCCCTCCTGTCGAGGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28657.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis