Browse Element(s) Details


OsAffx.15388.1.S1_at

Description tigr:9634.m01223
TID=OsAffx.15388.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1243011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12390Os.49253.1.S1_at11/116+6715188..6720901Galactoside-binding lectin family protein, expressed
LOC_Os06g12400Os.17425.1.S1_at11/116+6724321..6733446PHD-finger family protein, expressed
LOC_Os06g12410Os.9333.1.A1_s_at11/116+6735134..6736797GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g12430OsAffx.15388.1.S1_at11/116+6740343..6740946hypothetical protein
LOC_Os06g12440OsAffx.28657.2.S1_at11/116+6742784..6743850Protease inhibitor/seed storage/LTP family protein
LOC_Os06g12450Os.5738.1.S1_at11/116+6747359..6752337Soluble starch synthase 2-3, chloroplast precursor, putative, expressed
LOC_Os06g12460OsAffx.15389.1.S1_at11/116+6757182..6761996glycosyltransferase 5, putative, expressed
LOC_Os06g12470Os.33878.1.S1_at6/116+6763464..6771922expressed protein
LOC_Os06g12470OsAffx.21953.1.S1_at2/116+6763464..6771922expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15388.1.S1_at--442--8031Chr06:6740874..6740898 (25 bp)
GGAGGGTTCATTGATCGGCAAGCAT
LOC_Os06g12430
OsAffx.15388.1.S1_at--530--3591Chr06:6740852..6740876 (25 bp)
CATTCCGAATGTCCAATTGCTCTGA
LOC_Os06g12430
OsAffx.15388.1.S1_at--932--1172Chr12:13502064..13502083 (20 bp)
AGTACTCCGGACATGCAACCAAAAG
NONE
OsAffx.15388.1.S1_at--501--6711Chr06:6740779..6740803 (25 bp)
GTTCGATAGTCTCGTCACTTTGATC
LOC_Os06g12430
OsAffx.15388.1.S1_at--648--5371Chr06:6740573..6740597 (25 bp)
GAAGAATACTCTCCTGAGGACTCCC
LOC_Os06g12430
OsAffx.15388.1.S1_at--1155--10011Chr06:6740536..6740560 (25 bp)
TAGAGTCAGGCTCATCCGATAGTTG
LOC_Os06g12430
OsAffx.15388.1.S1_at--271--9911Chr06:6740480..6740504 (25 bp)
TACTCCAGGATTGCTTGGATGCCCA
LOC_Os06g12430
OsAffx.15388.1.S1_at--1061--8551Chr06:6740465..6740489 (25 bp)
TGGATGCCCAGAGCCATAGTGCAAA
LOC_Os06g12430
OsAffx.15388.1.S1_at--206--5431Chr06:6740435..6740459 (25 bp)
GAACCGGCCATCGAACCAGTAAAGC
LOC_Os06g12430
OsAffx.15388.1.S1_at--270--9831Chr06:6740416..6740440 (25 bp)
TAAAGCTTCTGGTTCACCGGCTCAC
LOC_Os06g12430
OsAffx.15388.1.S1_at--131--7691Chr06:6740378..6740402 (25 bp)
GGGTCGTCCGGTTTGACTGCAGAAC
LOC_Os06g12430
Target Sequence 
GGAGGGTTCATTGATCGGCAAGCATTCCGAATGTCCAATTGCTCTGAGAGCAATCCACCACAACTGCCAGTACTCCGGAC
ATGCAACCAAAAGGTGTTCGATAGTCTCGTCACTTTGATCGCAAAGAACACAGCACTCCGGGTGCGACAAGCCACGGCTC
CGGAGACGAACAGAGCACGATATGCTGACCGAGAAGAATACTCTCCTGAGGACTCCCACCTCCAAATCATAGAGTCAGGC
TCATCCGATAGTTGGATTGACATAAGGATATCCCAGAGTTTGAGATACTCCAGGATTGCTTGGATGCCCAGAGCCATAGT
GCAAAAAGCCGAACCGGCCATCGAACCAGTAAAGCTTCTGGTTCACCGGCTCACCGGTCTGACCACTGGGTCGTCCGGTT
TGACTGCAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis