Browse Element(s) Details


Os.17425.1.S1_at

Description gb:AB081340.1
DB_XREF= gi:22830606
GEN=HAZ1
TID=Os.17425.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17425 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) HAZ1 mRNA for PHD-finger family homeodomain protein, complete cds.
PROD=PHD-finger family homeodomain protein
FL= gb:AB081340.1 gb:AK121314.1 gb:AK101428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1240011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12360OsAffx.15386.1.S1_at11/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12360OsAffx.27652.1.S1_x_at1/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12370Os.51794.1.S1_x_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12370Os.51794.1.S1_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12380OsAffx.18105.2.A1_at11/116+6711479..6712222hypothetical protein
LOC_Os06g12390Os.49253.1.S1_at11/116+6715188..6720901Galactoside-binding lectin family protein, expressed
LOC_Os06g12400Os.17425.1.S1_at11/116+6724321..6733446PHD-finger family protein, expressed
LOC_Os06g12410Os.9333.1.A1_s_at11/116+6735134..6736797GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g12430OsAffx.15388.1.S1_at11/116+6740343..6740946hypothetical protein
LOC_Os06g12440OsAffx.28657.2.S1_at11/116+6742784..6743850Protease inhibitor/seed storage/LTP family protein
LOC_Os06g12450Os.5738.1.S1_at11/116+6747359..6752337Soluble starch synthase 2-3, chloroplast precursor, putative, expressed
LOC_Os06g12460OsAffx.15389.1.S1_at11/116+6757182..6761996glycosyltransferase 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17425.1.S1_at--994--2551Chr06:6732870..6732894 (25 bp)
AAGACTGGCAGGTGAAACTCCCTAG
LOC_Os06g12400
Os.17425.1.S1_at--399--6911Chr06:6732937..6732961 (25 bp)
GTATGCTGCCTAGATTGCTTTTAAT
LOC_Os06g12400
Os.17425.1.S1_at--1106--10671Chr06:6732990..6733014 (25 bp)
TTCCTTCTTGTTTGTGGTCGCAAAA
LOC_Os06g12400
Os.17425.1.S1_at--947--4471Chr06:6733017..6733041 (25 bp)
GCCTGATTGTTGTAGCTGCTATGTT
LOC_Os06g12400
Os.17425.1.S1_at--147--10111Chr06:6733036..6733060 (25 bp)
TATGTTTGTTCCCTTTGGCTGTCCA
LOC_Os06g12400
Os.17425.1.S1_at--1160--8331Chr06:6733052..6733076 (25 bp)
GGCTGTCCATCCAGAATTTCTGATA
LOC_Os06g12400
Os.17425.1.S1_at--167--5631Chr06:6733081..6733105 (25 bp)
GACACTTGGAAGCACATCCTGCAGC
LOC_Os06g12400
Os.17425.1.S1_at--869--3831Chr06:6733099..6733123 (25 bp)
CTGCAGCACTCCAGTTACAGGAATG
LOC_Os06g12400
Os.17425.1.S1_at--541--2491Chr06:6733139..6733163 (25 bp)
AACAGTTTAGCATAGTCCGTAGTGG
LOC_Os06g12400
Os.17425.1.S1_at--598--7411Chr06:6733173..6733197 (25 bp)
GTGTTGTTTGTCGTGCCCTGTAGTC
LOC_Os06g12400
Os.17425.1.S1_at--721--7371Chr06:6733246..6733270 (25 bp)
GTGACTGAAATCTATACCTCTTTTT
LOC_Os06g12400
Target Sequence 
AAGACTGGCAGGTGAAACTCCCTAGTGTTCGAGTTATTTGACCAGATGTGCAGAGAAGCAAGTTTTTGTATGCTGCCTAG
ATTGCTTTTAATCAGATGTGCAGAGAAGCAAAGATTTTTTTTCCTTCTTGTTTGTGGTCGCAAAAAAGCCTGATTGTTGT
AGCTGCTATGTTTGTTCCCTTTGGCTGTCCATCCAGAATTTCTGATAAGATGACACTTGGAAGCACATCCTGCAGCACTC
CAGTTACAGGAATGGGTTCAGTTGACTGTAACAGTTTAGCATAGTCCGTAGTGGACAGTAGCTGTGTTGTTTGTCGTGCC
CTGTAGTCCTGTACTACCTTGAATTAGGACTGCTAAGTGAACCGATACAAGTACTTGTGACTGAAATCTATACCTCTTTT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis