Browse Element(s) Details


Os.11787.1.S1_at

Description gb:AK073305.1
DB_XREF= gi:32983328
TID=Os.11787.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024J11, full insert sequence.
FL= gb:AK060986.1 gb:AK073305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0102011/11pyridoxin biosynthesis protein ER1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01010OsAffx.28217.1.S1_at11/117+631..1433NA
LOC_Os07g01010OsAffx.25970.2.S1_s_at1/117+631..1433NA
LOC_Os07g01020Os.11787.1.S1_at11/117+9940..11282pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os07g01020Os.36435.2.S1_x_at5/117+9940..11282pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os07g01030Os.56213.1.S1_at11/117+15819..19701glycosyl transferase, group 1 family protein, expressed
LOC_Os07g01030Os.27758.1.S1_at11/117+15819..19701glycosyl transferase, group 1 family protein, expressed
LOC_Os07g01040NANA7+25339..28172retrotransposon protein, putative, unclassified
LOC_Os07g01050NANA7+29174..32035retrotransposon protein, putative, unclassified
LOC_Os07g01060Os.4950.2.S1_a_at11/117+34439..40588expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0008615biological_processpyridoxine biosynthesis
GO:0009723biological_processresponse to ethylene stimulus
GO:0042819biological_processvitamin B6 biosynthesis
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0012505cellular_componentendomembrane system
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11787.1.S1_at--185--9971Chr07:10480..10504 (25 bp)
TACCAGTCGTTCAGTTTGCGGCCGG
LOC_Os07g01020
Os.11787.1.S1_at--1122--2151Chr07:10321..10345 (25 bp)
ACAGCGACCCCAAGATCTTGGCGGA
LOC_Os07g01020
Os.11787.1.S1_at--125--2631Chr07:10259..10283 (25 bp)
AACCTCTCCGATCCTAAGGTGGAGC
LOC_Os07g01020
Os.11787.1.S1_at--400--6971Chr07:10215..10239 (25 bp)
GTAGCCCATCCATCATCATTCATAT
LOC_Os07g01020
Os.11787.1.S1_at--522--4451Chr07:10188..10212 (25 bp)
GCCTTATCCTTCTTTCGCTATATAT
LOC_Os07g01020
Os.11787.1.S1_at--746--10191Chr07:10166..10190 (25 bp)
TATATATGCTCCTTCCTTCGATTAA
LOC_Os07g01020
Os.11787.1.S1_at--133--151Chr07:10135..10159 (25 bp)
ATTACATCTACTATCATCGTCGTGA
LOC_Os07g01020
Os.11787.1.S1_at--174--1411Chr07:10093..10117 (25 bp)
AGACACCAGCCAGCCAGGACTTTGT
LOC_Os07g01020
Os.11787.1.S1_at--386--2151Chr07:10016..10040 (25 bp)
ACAGCACATGTATCGATTAGGAGCA
LOC_Os07g01020
Os.11787.1.S1_at--415--71Chr07:9972..9996 (25 bp)
ATTGCTGTGGACTGGATCCATTTCT
LOC_Os07g01020
Os.11787.1.S1_at--283--831Chr07:9947..9971 (25 bp)
ATGGAAACTGTCATACTTCCCGTTC
LOC_Os07g01020
Target Sequence 
TACCAGTCGTTCAGTTTGCGGCCGGCGGTGTGGCCACCCCCGCCGACGCTGCCCTCATGATGCAGCTCGGCTGCGACGGC
GTCTTCGTCGGCTCCGGCATCTTCAAGAGCGGCGACCCCGCGCGCCGCGCCCGCGCCATCGTGCAGGCCGTCACCCACTA
CAGCGACCCCAAGATCTTGGCGGAGGTCAGCAGCGGGCTCGGCGAGGCCATGGTTGGCATCAACCTCTCCGATCCTAAGG
TGGAGCGCTTCGCCGCCCGCTCCGAGTAGCCCATCCATCATCATTCATATCCGCCTTATCCTTCTTTCGCTATATATATA
TGCTCCTTCCTTCGATTAAGTAATAATTACATCTACTATCATCGTCGTGATAAGAAGAAAATGAATTAGACACCAGCCAG
CCAGGACTTTGTTGGCTTGGCTCACTTCCCTTCCCTTCCCTTCTTGGTGATGATGTAACATGGAACAGCACATGTATCGA
TTAGGAGCATGTATTGTTATTTTTGCTAATTGCTGTGGACTGGATCCATTTCTATGGAAACTGTCATACTTCCCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis