Browse Element(s) Details


Os.11843.1.S1_at

Description gb:AK100294.1
DB_XREF= gi:32985503
TID=Os.11843.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075P18, full insert sequence.
FL= gb:AK100294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4911011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49070OsAffx.25936.1.S1_s_at11/114+29037530..29039904transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g49070OsAffx.25936.7.S1_s_at11/114+29037530..29039904transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g49070OsAffx.25936.2.S1_x_at4/114+29037530..29039904transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g49070OsAffx.25936.5.S1_x_at2/114+29037530..29039904transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g49080NANA4+29040083..29040986hypothetical protein
LOC_Os04g49090Os.10827.1.S1_x_at10/114+29041180..29044467transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g49090Os.46055.2.S1_x_at6/114+29041180..29044467transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g49100Os.27639.1.S1_x_at9/114+29049377..29053367transposon protein, putative, unclassified
LOC_Os04g49100OsAffx.8980.1.S1_at5/114+29049377..29053367transposon protein, putative, unclassified
LOC_Os04g49110Os.11843.1.S1_at11/114+29055938..29058170GRAS family transcription factor containing protein, expressed
LOC_Os04g49120OsAffx.26632.1.S1_x_at4/114+29064191..29067075retrotransposon protein, putative, LINE subclass
LOC_Os04g49120OsAffx.26632.1.S1_at3/114+29064191..29067075retrotransposon protein, putative, LINE subclass
LOC_Os04g49120Os.26869.1.A1_at2/114+29064191..29067075retrotransposon protein, putative, LINE subclass
LOC_Os04g49130Os.7341.1.S1_at11/114+29070092..29073108Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os04g49140Os.57212.1.S1_at11/114+29077378..29078553expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11843.1.S1_at--714--9431Chr04:29056244..29056268 (25 bp)
TCGGACCGGGCATTGCTGACCAGGT
LOC_Os04g49110
Os.11843.1.S1_at--925--10711Chr04:29056232..29056256 (25 bp)
TTGCTGACCAGGTGTTGGCCCGGCA
LOC_Os04g49110
Os.11843.1.S1_at--837--5011Chr04:29056194..29056218 (25 bp)
GCAGGGTTCGCCGTCAAGGCGGAGA
LOC_Os04g49110
Os.11843.1.S1_at--1055--7971Chr04:29056101..29056125 (25 bp)
GGATGCCGCGACATTATTGCCGTCA
LOC_Os04g49110
Os.11843.1.S1_at--774--3051Chr04:29056073..29056097 (25 bp)
AATCGGTCACTTAATTAATTCGCGC
LOC_Os04g49110
Os.11843.1.S1_at--149--10511Chr04:29056059..29056083 (25 bp)
TTAATTCGCGCTCTTTTTCCATTTT
LOC_Os04g49110
Os.11843.1.S1_at--177--171Chr04:29056030..29056054 (25 bp)
ATTTTCCATTTGGTGAGTGAGTTTG
LOC_Os04g49110
Os.11843.1.S1_at--1066--1111Chr04:29056015..29056039 (25 bp)
AGTGAGTTTGGTATTGATCTGGTAA
LOC_Os04g49110
Os.11843.1.S1_at--370--6411Chr04:29056000..29056024 (25 bp)
GATCTGGTAAAGCTTAATTAGTTGT
LOC_Os04g49110
Os.11843.1.S1_at--1145--6631Chr04:29055980..29056004 (25 bp)
GTTGTAGCAACTCATAATTCTTGGT
LOC_Os04g49110
Os.11843.1.S1_at--402--3571Chr04:29055968..29055992 (25 bp)
CATAATTCTTGGTAGCTAATGCTTA
LOC_Os04g49110
Target Sequence 
TCGGACCGGGCATTGCTGACCAGGTGTTGGCCCGGCAGGGCCCCGTCGCGGCAGGGTTCGCCGTCAAGGCGGAGAACGGC
GTGCTCCGGCTCGGATGGATGGGGCGCGTGGTCACCGTCGCCTCCGCCTGGCGTTAGACCAGGGGATGCCGCGACATTAT
TGCCGTCACNAAATCGGTCACTTAATTAATTCGCGCTCTTTTTCCATTTTTTTCATTTTCCATTTGGTGAGTGAGTTTGG
TATTGATCTGGTAAAGCTTAATTAGTTGTAGCAACTCATAATTCTTGGTAGCTAATGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis