Browse Element(s) Details


Os.11860.1.S2_at

Description gb:CB681915
DB_XREF= gi:29685640
DB_XREF=OSJNEf08K19.r
CLONE=OSJNEf08K19
TID=Os.11860.1
CNT=54
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.11860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-036-A07, full insert sequence
FL= gb:AK104683.1 gb:AK069108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0560010/11ATA15 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05550NANA5+2737879..2739454expressed protein
LOC_Os05g05560Os.37511.1.S1_at10/115+2741273..2742846expressed protein
LOC_Os05g05570NANA5+2743232..2743573Agenet domain containing protein
LOC_Os05g05580NANA5+2745546..2753325expressed protein
LOC_Os05g05590Os.27479.1.S1_at11/115+2755406..2761564sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os05g05590OsAffx.25220.1.S1_at1/115+2755406..2761564sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os05g05600Os.11860.1.S1_at11/115+2764109..2770016ATA15 protein, putative, expressed
LOC_Os05g05600Os.11860.1.S2_at10/115+2764109..2770016ATA15 protein, putative, expressed
LOC_Os05g05610NANA5+2771689..2772394expressed protein
LOC_Os05g05620Os.50371.1.S1_x_at11/115+2774453..2775564glutathione S-transferase GSTF1, putative, expressed
LOC_Os05g05630OsAffx.19542.3.S1_x_at6/115+2776730..2781421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g05640Os.57161.1.S1_at11/115+2781709..2783003pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g05640OsAffx.26743.1.S1_x_at11/115+2781709..2783003pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g05640Os.57161.1.S1_x_at11/115+2781709..2783003pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g05650Os.49454.1.S1_at11/115+2784188..2786017C2 domain containing protein, expressed
LOC_Os05g05660OsAffx.10791.2.A1_x_at10/115+2788635..2795963PWWP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010149biological_processsenescence (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11860.1.S2_at--982--4491Chr05:2769440..2769464 (25 bp)
GCCGCGAGTCCGATCTGTAACGGAC
LOC_Os05g05600
Os.11860.1.S2_at--521--6411Chr05:2769451..2769475 (25 bp)
GATCTGTAACGGACGCTTGCTTCTT
LOC_Os05g05600
Os.11860.1.S2_at--364--8731Chr05:2769455..2769479 (25 bp)
TGTAACGGACGCTTGCTTCTTTCCC
LOC_Os05g05600
Os.11860.1.S2_at--924--6432Chr10:1388610..1388630 (21 bp)
GATCAGGTTTTTGGGTAGTGCCTCT
NONE
Os.11860.1.S2_at--949--1011Chr05:2769617..2769641 (25 bp)
AGGTTTTTGGGTAGTGCCTCTCGCA
LOC_Os05g05600
Os.11860.1.S2_at--576--10251Chr05:2769622..2769646 (25 bp)
TTTGGGTAGTGCCTCTCGCACGATT
LOC_Os05g05600
Os.11860.1.S2_at--670--7831Chr05:2769626..2769650 (25 bp)
GGTAGTGCCTCTCGCACGATTGCTC
LOC_Os05g05600
Os.11860.1.S2_at--281--1891Chr05:2769641..2769665 (25 bp)
ACGATTGCTCGCCATGTCTGGAGAT
LOC_Os05g05600
Os.11860.1.S2_at--396--71Chr05:2769644..2769668 (25 bp)
ATTGCTCGCCATGTCTGGAGATGCC
LOC_Os05g05600
Os.11860.1.S2_at--551--4791Chr05:2769647..2769671 (25 bp)
GCTCGCCATGTCTGGAGATGCCGCC
LOC_Os05g05600
Os.11860.1.S2_at--285--1971NONE
ACTGTTTATGCCATGGTTATTGGTT
NONE
Target Sequence 
GCCGCGAGTCCGATCTGTAACGGACGCTTGCTTCTTTCCCGGTGTTAGTTCCTCCTCCGCACCAGTGCTGTTCTCGCTTC
CTCGCTTCTGATCTCTTGCGCGCACGAGAGATTGGAAGGAGCAGTGCCTCCAAAACCACATCTTCGCCTGAGATCTGCAC
CGGGTAGGCGGGTGATCAGGTTTTTGGGTAGTGCCTCTCGCACGATTGCTCGCCATGTCTGGAGATGCCGCCGCCGCTAC
TGGAGGAGATGGCAGAGGTGGTGCGCCAGGAGCTGGAGCCGGTGCCGCGAACGACAACATCAACGGAGGCAATTCTGCCT
CATAATCCAACGGAGGGCCATTCTCGAGGTATATCCTTCTCCTGTTCCCTTTGTTAGCGCTATCGCTTTACTGTTATGTG
CGCTGTGTTCCTGTTCCTGACATTCATGATGCCTCTAGCATGTTATTGCGTTACTGTAATGTTTCTGTTCCTGACATTCA
TGATGCGCATAGTATGCTACTGGTTATGTTAAGATCACTCTACACTGTTTATGCCATGGTTATTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11860.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis