Browse Element(s) Details


Os.11868.1.A1_at

Description gb:AK063069.1
DB_XREF= gi:32973087
TID=Os.11868.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013046L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-G11, full insert sequence.
FL= gb:AK063069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5750011/11phosphatidate cytidylyltransferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57460NANA4+33963645..33969798retrotransposon protein, putative, unclassified
LOC_Os04g57470Os.40360.1.S1_x_at1/114+33975806..33976564hypothetical protein
LOC_Os04g57480Os.51843.1.S1_x_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.1.S1_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.2.S1_at1/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57490Os.55109.1.S1_at11/114+33986934..33988846Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57510Os.11868.3.S1_x_at11/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57510Os.11868.2.S1_at11/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57510OsAffx.988.1.S1_at1/114+33990592..33995732Exostosin family protein, expressed
LOC_Os04g57500Os.11868.1.A1_at11/114+33991088..33992032phosphatidate cytidylyltransferase family protein, putative, expressed
LOC_Os04g57520Os.49659.1.S1_at11/114+33996762..34003309expressed protein
LOC_Os04g57530NANA4+34012126..34014305expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008654biological_processphospholipid biosynthesis
GO:0016020cellular_componentmembrane
GO:0004605molecular_functionphosphatidate cytidylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11868.1.A1_at--248--1471Chr04:33991552..33991576 (25 bp)
AGAAGGTATGGCTCCGCGAAGCTGC
LOC_Os04g57500
Os.11868.1.A1_at--609--10551Chr04:33991618..33991642 (25 bp)
TTCATTTCTGGCTTCCTTCTATCTG
LOC_Os04g57500
Os.11868.1.A1_at--777--3691Chr04:33991636..33991746 (25 bp)
CTATCTGCACTGATGCTGTTCTACT
LOC_Os04g57500
Os.11868.1.A1_at--693--9891Chr04:33991743..33991767 (25 bp)
TACTTCTCTTGCCTTGGTTACTTCA
LOC_Os04g57500
Os.11868.1.A1_at--1097--10511Chr04:33991764..33991788 (25 bp)
TTCACTGTCTGCTGGGATCTGGCAC
LOC_Os04g57500
Os.11868.1.A1_at--9--9471Chr04:33991781..33991805 (25 bp)
TCTGGCACTTGGTAAACTGGCTCTT
LOC_Os04g57500
Os.11868.1.A1_at--654--8031Chr04:33991829..33991853 (25 bp)
GGAGTGTATTCCTGTCAATGATGTT
LOC_Os04g57500
Os.11868.1.A1_at--21--6311Chr04:33991857..33991881 (25 bp)
GATGACAATATCTCCGTTCCTTTGG
LOC_Os04g57500
Os.11868.1.A1_at--395--731Chr04:33991887..33991911 (25 bp)
ATGTTGGCAGCCTATCTGTTATTTG
LOC_Os04g57500
Os.11868.1.A1_at--704--3511Chr04:33991960..33991984 (25 bp)
CATGTCCTGAATTTGGTACTGCCAA
LOC_Os04g57500
Os.11868.1.A1_at--418--10051Chr04:33991991..33992015 (25 bp)
TAGATTGGATCTCTTTCTGTTGAAT
LOC_Os04g57500
Target Sequence 
AGAAGGTATGGCTCCGCGAAGCTGCCATTCAATGAGAACAAGAGCTGGATAGGAAGCATCTCAATGTTCATTTCTGGCTT
CCTTCTATCTGCACTGATGCTGTTCTACTTCTCTTGCCTTGGTTACTTCACTGTCTGCTGGGATCTGGCACTTGGTAAAC
TGGCTCTTGTTGCATTAGCAGCTACTGTAGTGGAGTGTATTCCTGTCAATGATGTTGTGGATGACAATATCTCCGTTCCT
TTGGCCACCATGTTGGCAGCCTATCTGTTATTTGGCTACAGTTCATGTTGTTGAGACTATAAAATTTCTCCCTTTTGCTT
TTCATGTCCTGAATTTGGTACTGCCAAACATCATAGATTGGATCTCTTTCTGTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11868.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis