Browse Element(s) Details


Os.11874.1.S1_s_at

Description gb:AK066004.1
DB_XREF= gi:32976022
TID=Os.11874.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013046P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046P22, full insert sequence.
FL= gb:AK066004.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g187206/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18680OsAffx.28512.2.S1_s_at11/117+11036307..11038689hypothetical protein
LOC_Os07g18680OsAffx.28512.1.S1_at10/117+11036307..11038689hypothetical protein
LOC_Os07g18690Os.45173.1.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18690OsAffx.31892.2.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18700OsAffx.29376.1.S1_x_at1/117+11049242..11052644plasma membrane sulphate transporter, putative
LOC_Os07g18710Os.30965.1.S1_at11/117+11058618..11060085F-box domain containing protein, expressed
LOC_Os07g18720Os.37765.1.S1_at10/117+11063192..11073589expressed protein
LOC_Os07g18720Os.11874.1.S1_s_at6/117+11063192..11073589expressed protein
LOC_Os07g18730OsAffx.21085.1.S1_at11/117+11075388..11078929retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18739NANA7+11083129..11083356NA
LOC_Os07g18750Os.11212.1.S1_at11/117+11088829..11089564Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g18760OsAffx.30226.4.S1_x_at3/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18760OsAffx.30226.4.S1_at1/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18760OsAffx.30226.1.S1_at1/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18760OsAffx.30226.1.S1_x_at1/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18770NANA7+11098469..11102512retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11874.1.S1_s_at--257--5231Chr07:11069959..11069983 (25 bp)
GAATTTGGCGGCTGCAAATGATGAT
LOC_Os07g18720
Os.11874.1.S1_s_at--1076--6631Chr07:11072476..11072500 (25 bp)
GTTGATCTGCTTTTAGGAAAGGCTT
LOC_Os07g18720
Os.11874.1.S1_s_at--243--4331Chr07:11072514..11072538 (25 bp)
CCATATCAGTGATGCTGTTGCTGTT
LOC_Os07g18720
Os.11874.1.S1_s_at--286--1111Chr07:11072521..11072545 (25 bp)
AGTGATGCTGTTGCTGTTTATGAAA
LOC_Os07g18720
Os.11874.1.S1_s_at--216--1251Chr07:11072568..11072592 (25 bp)
AGACTTCCGTGGTTATTTGGCTAAG
LOC_Os07g18720
Os.11874.1.S1_s_at--387--7871NONE
GGTTATTTGGCTAAGGGAATCATAT
NONE
Os.11874.1.S1_s_at--63--5031Chr07:11073167..11073188 (22 bp)
GCAGAGAGAATGTTTATTCAGGCCA
LOC_Os07g18720
Os.11874.1.S1_s_at--838--4311NONE
GAATGTTTATTCAGGCCAAATTTTT
NONE
Os.11874.1.S1_s_at--113--3291Chr07:11075155..11075179 (25 bp)
CAAACAATATTTAGATCAAGGCAGT
NONE
Os.11874.1.S1_s_at--988--6451Chr07:11075168..11075192 (25 bp)
GATCAAGGCAGTTATAGTGTATAGA
NONE
Os.11874.1.S1_s_at--555--10171Chr07:11075180..11075204 (25 bp)
TATAGTGTATAGAAAACCTTCTTGT
NONE
Target Sequence 
GAATTTGGCGGCTGCAAATGATGATGGTGCTCCAAAATCTCAATATATTGATNTTATCCAAGTTGATCTGCTTTTAGGAA
AGGCTTATTNTGATTGGGGCCATATCAGTGATGCTGTTGCTGTTTATGAAAATNTAATCNCTGAACNATCCTGNAGACTT
CCGTGGTTATTTGGCTAAGGGAATCATATTAAAGGAAAATGGTAAATCAGGTGAAGCAGAGAGAATGTTTATTCAGGCCA
AATTTTTCGCNCCTGATGCAGNGAAGGCACTAGTTGATCGATATGCNCAAAGGTAGCGTGAGACNCANCAGGGAAATTCC
AATTCCTCTAATTTTTGTCCCATTATTTTTTGTTTAGATAGCATCGATNTAAGTTCGTCAGGAATTTTATCNCCTGTCAA
TTCCTAGATTCAGCNCGACAGAAGGGACNCGGGGATAATTTGCTTGTCAAACAATATTTAGATCAAGGCAGTTATAGTGT
ATAGAAAACCTTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11874.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis