Browse Element(s) Details


Os.11899.1.S1_at

Description gb:AK069349.1
DB_XREF= gi:32979373
TID=Os.11899.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013023H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023017L09, full insert sequence.
FL= gb:AK069349.1 gb:AK099463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3236011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32290OsAffx.31976.1.S1_at11/1112+19466662..19467473expressed protein
LOC_Os12g32290OsAffx.31976.1.S1_s_at11/1112+19466662..19467473expressed protein
LOC_Os12g32300OsAffx.31977.1.S1_at11/1112+19472219..19472560hypothetical protein
LOC_Os12g32310OsAffx.7766.1.S1_at10/1112+19473878..19475306hypothetical protein
LOC_Os12g32320NANA12+19476984..19482240expressed protein
LOC_Os12g32330OsAffx.19931.1.S1_at11/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.12972.1.S1_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.10482.1.S1_x_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32360Os.11899.1.S1_at11/1112+19490208..19492581expressed protein
LOC_Os12g32370OsAffx.10645.1.S1_at3/1112+19499530..19499847hypothetical protein
LOC_Os12g32380Os.10442.1.S1_at11/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32380OsAffx.31979.1.S1_at8/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32380Os.9437.1.S1_at3/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32390NANA12+19515305..19515885expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11899.1.S1_at--952--3191Chr12:19490750..19490774 (25 bp)
CAATGAGCTGCATCGTGTGTACCGG
LOC_Os12g32360
Os.11899.1.S1_at--966--8471Chr12:19490735..19490759 (25 bp)
TGTGTACCGGGTTCAGAAGCAACTG
LOC_Os12g32360
Os.11899.1.S1_at--1044--1291Chr12:19490703..19490727 (25 bp)
AGATGCAGAGCATCTCAACCCAGGC
LOC_Os12g32360
Os.11899.1.S1_at--249--4871Chr12:19490668..19490692 (25 bp)
GCAGACAACCGAACCATACCAAGAT
LOC_Os12g32360
Os.11899.1.S1_at--810--10591Chr12:19490575..19490599 (25 bp)
TTCGACCTTGAACTCACACTGGCAA
LOC_Os12g32360
Os.11899.1.S1_at--695--5011Chr12:19490534..19490558 (25 bp)
GCAGGAGAAGCCATCCAACTCGGAC
LOC_Os12g32360
Os.11899.1.S1_at--18--5731Chr12:19490512..19490536 (25 bp)
GACTCCGGAGCAACAGTGTCATCGT
LOC_Os12g32360
Os.11899.1.S1_at--595--3071Chr12:19490475..19490499 (25 bp)
AATCAGAGTCGGAGCAGCGGTTCCC
LOC_Os12g32360
Os.11899.1.S1_at--660--3371Chr12:19490461..19490485 (25 bp)
CAGCGGTTCCCTGAGTCCAATGTAG
LOC_Os12g32360
Os.11899.1.S1_at--1013--6091Chr12:19490449..19490473 (25 bp)
GAGTCCAATGTAGCCCTAAGGTTTC
LOC_Os12g32360
Os.11899.1.S1_at--371--3191Chr12:19490389..19490413 (25 bp)
CAATCTCCTTGGCTCTATCAATGTT
LOC_Os12g32360
Target Sequence 
CAATGAGCTGCATCGTGTGTACCGGGTTCAGAAGCAACTGATGATAGAGATGCAGAGCATCTCAACCCAGGCTCAAGCAA
AAGCAGACAACCGAACCATACCAAGATTGGAGATGGACCATCAACAATGGTACAGAAACTCGGGGGAGAAGAAGGCCCCC
GAATTCGTTGAAGATTTCGACCTTGAACTCACACTGGCAACTGGGGCTGGTAGGAAGCAGGAGAAGCCATCCAACTCGGA
CTCCGGAGCAACAGTGTCATCGTCGACTTCTGCTGAATCAGAGTCGGAGCAGCGGTTCCCTGAGTCCAATGTAGCCCTAA
GGTTTCAGAATGAGAGCAAGAGGCATGATGATCAGCTCATGCAATCTCCTTGGCTCTATCAATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis