Browse Element(s) Details


Os.10442.1.S1_at

Description gb:AK059123.1
DB_XREF= gi:32969141
TID=Os.10442.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-F08, full insert sequence.
FL= gb:AK106598.1 gb:AK059123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3238011/1140S ribosomal protein S29, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32330OsAffx.19931.1.S1_at11/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.12972.1.S1_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.10482.1.S1_x_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32360Os.11899.1.S1_at11/1112+19490208..19492581expressed protein
LOC_Os12g32370OsAffx.10645.1.S1_at3/1112+19499530..19499847hypothetical protein
LOC_Os12g32380Os.10442.1.S1_at11/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32380OsAffx.31979.1.S1_at8/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32380Os.9437.1.S1_at3/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32390NANA12+19515305..19515885expressed protein
LOC_Os12g32400OsAffx.31980.1.S1_at11/1112+19518026..19519034Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g32410OsAffx.23442.1.S1_at1/1112+19521895..19523701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32420OsAffx.20387.1.S1_x_at2/1112+19524176..19527561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32430OsAffx.17106.1.S1_x_at1/1112+19529092..19531519retrotransposon protein, putative, unclassified
LOC_Os12g32430Os.25754.2.S1_x_at1/1112+19529092..19531519retrotransposon protein, putative, unclassified
LOC_Os12g32434OsAffx.31981.1.S1_x_at11/1112+19535492..19536601hypothetical protein
LOC_Os12g32434OsAffx.31981.1.S1_at11/1112+19535492..19536601hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10442.1.S1_at--219--3571Chr12:19509556..19509575 (20 bp)
CATCAAGTACCGCTAAAGTCATCTT
LOC_Os12g32380
Os.10442.1.S1_at--692--9831Chr12:19509564..19509588 (25 bp)
TAAAGTCATCTTGGTTTCCTCAGCC
LOC_Os12g32380
Os.10442.1.S1_at--653--10671Chr12:19509579..19509603 (25 bp)
TTCCTCAGCCCTACTGCTGGGTGAA
LOC_Os12g32380
Os.10442.1.S1_at--261--3391Chr12:19509584..19509608 (25 bp)
CAGCCCTACTGCTGGGTGAAGAGAT
LOC_Os12g32380
Os.10442.1.S1_at--7--5311Chr12:19509622..19509646 (25 bp)
GAAGGCTTAATTTCAGTTCCAGTAA
LOC_Os12g32380
Os.10442.1.S1_at--489--10531Chr12:19509633..19509657 (25 bp)
TTCAGTTCCAGTAATTTAGCTGTTT
LOC_Os12g32380
Os.10442.1.S1_at--38--10471Chr12:19509648..19509672 (25 bp)
TTAGCTGTTTGTTTGGTACTCTGCA
LOC_Os12g32380
Os.10442.1.S1_at--589--3871Chr12:19509652..19509676 (25 bp)
CTGTTTGTTTGGTACTCTGCAGACT
LOC_Os12g32380
Os.10442.1.S1_at--656--2871Chr12:19509678..19509702 (25 bp)
AAGTGGTTTATGTTTCTGATGCTAT
LOC_Os12g32380
Os.10442.1.S1_at--914--4871Chr12:19509698..19509722 (25 bp)
GCTATTTGAATGATGTGGATGCTAA
LOC_Os12g32380
Os.10442.1.S1_at--47--4851Chr12:19509718..19509742 (25 bp)
GCTAAGTATGAATTAATCGCGCATC
LOC_Os12g32380
Target Sequence 
CATCAAGTACCGCTAAAGTCATCTTGGTTTCCTCAGCCCTACTGCTGGGTGAAGAGATGGAGCATTTAATGGAAGGCTTA
ATTTCAGTTCCAGTAATTTAGCTGTTTGTTTGGTACTCTGCAGACTAAAGTGGTTTATGTTTCTGATGCTATTTGAATGA
TGTGGATGCTAAGTATGAATTAATCGCGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis