Browse Element(s) Details


OsAffx.31979.1.S1_at

Description tigr:9640.m03145
TID=OsAffx.31979.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein S14pS29e, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g323808/1140S ribosomal protein S29, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32330OsAffx.19931.1.S1_at11/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.12972.1.S1_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.10482.1.S1_x_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32360Os.11899.1.S1_at11/1112+19490208..19492581expressed protein
LOC_Os12g32370OsAffx.10645.1.S1_at3/1112+19499530..19499847hypothetical protein
LOC_Os12g32380Os.10442.1.S1_at11/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32380OsAffx.31979.1.S1_at8/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32380Os.9437.1.S1_at3/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32390NANA12+19515305..19515885expressed protein
LOC_Os12g32400OsAffx.31980.1.S1_at11/1112+19518026..19519034Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g32410OsAffx.23442.1.S1_at1/1112+19521895..19523701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32420OsAffx.20387.1.S1_x_at2/1112+19524176..19527561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32430OsAffx.17106.1.S1_x_at1/1112+19529092..19531519retrotransposon protein, putative, unclassified
LOC_Os12g32430Os.25754.2.S1_x_at1/1112+19529092..19531519retrotransposon protein, putative, unclassified
LOC_Os12g32434OsAffx.31981.1.S1_x_at11/1112+19535492..19536601hypothetical protein
LOC_Os12g32434OsAffx.31981.1.S1_at11/1112+19535492..19536601hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31979.1.S1_at--520--9451NONE
TCGGCTTCATCAAGGTTATCCATGC
NONE
OsAffx.31979.1.S1_at--895--8291NONE
GGCTTCATCAAGGTTATCCATGCAG
NONE
OsAffx.31979.1.S1_at--564--10551NONE
TTCATCAAGGTTATCCATGCAGCTC
NONE
OsAffx.31979.1.S1_at--457--371Chr12:19511815..19511835 (21 bp)
ATCAAGGTTATCCATGCAGCTCAGG
LOC_Os12g32380
OsAffx.31979.1.S1_at--392--2911Chr12:19511815..19511838 (24 bp)
AAGGTTATCCATGCAGCTCAGGCCA
LOC_Os12g32380
OsAffx.31979.1.S1_at--937--711Chr12:19511838..19511862 (25 bp)
ATGATTTCTGCATACGACAAGCAGG
LOC_Os12g32380
OsAffx.31979.1.S1_at--1080--9051Chr12:19511846..19511870 (25 bp)
TGCATACGACAAGCAGGGTTTCAAA
LOC_Os12g32380
OsAffx.31979.1.S1_at--821--4691Chr12:19512540..19512562 (23 bp)
GCGGCTGAGCTCACAGCACTTCGGG
LOC_Os12g32380
OsAffx.31979.1.S1_at--550--8911Chr12:19512543..19512567 (25 bp)
TGAGCTCACAGCACTTCGGGTGGCC
LOC_Os12g32380
OsAffx.31979.1.S1_at--1110--1571Chr12:19512545..19512569 (25 bp)
AGCTCACAGCACTTCGGGTGGCCTA
LOC_Os12g32380
OsAffx.31979.1.S1_at--492--3311Chr12:19512549..19512573 (25 bp)
CACAGCACTTCGGGTGGCCTACAAA
LOC_Os12g32380
Target Sequence 
TCGGCTTCATCAAGGTTATCCATGCAGCTCAGGCCATGATTTCTGCATACGACAAGCAGGGTTTCAAAAACCGCCGGGGG
CCCGGTTACCGCCACCCGGCGGCTGAGCTCACAGCACTTCGGGTGGCCTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis