Browse Element(s) Details


OsAffx.31980.1.S1_at

Description tigr:9640.m03147
TID=OsAffx.31980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3240011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32370OsAffx.10645.1.S1_at3/1112+19499530..19499847hypothetical protein
LOC_Os12g32380Os.10442.1.S1_at11/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32380OsAffx.31979.1.S1_at8/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32380Os.9437.1.S1_at3/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32390NANA12+19515305..19515885expressed protein
LOC_Os12g32400OsAffx.31980.1.S1_at11/1112+19518026..19519034Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g32410OsAffx.23442.1.S1_at1/1112+19521895..19523701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32420OsAffx.20387.1.S1_x_at2/1112+19524176..19527561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32430OsAffx.17106.1.S1_x_at1/1112+19529092..19531519retrotransposon protein, putative, unclassified
LOC_Os12g32430Os.25754.2.S1_x_at1/1112+19529092..19531519retrotransposon protein, putative, unclassified
LOC_Os12g32434OsAffx.31981.1.S1_x_at11/1112+19535492..19536601hypothetical protein
LOC_Os12g32434OsAffx.31981.1.S1_at11/1112+19535492..19536601hypothetical protein
LOC_Os12g32440Os.41248.4.S1_x_at3/1112+19540387..19546403retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31980.1.S1_at--577--6591Chr12:19518070..19518094 (25 bp)
GATTGCGCATTTGCAGTCATTGTTC
LOC_Os12g32400
OsAffx.31980.1.S1_at--257--51Chr12:19518088..19518112 (25 bp)
ATTGTTCTGGAGCAGCAGCGATGCT
LOC_Os12g32400
OsAffx.31980.1.S1_at--447--3871Chr12:19518111..19518135 (25 bp)
CTGATCCTTGTTTTGGTAGCTCATC
LOC_Os12g32400
OsAffx.31980.1.S1_at--25--6971Chr12:19518126..19518150 (25 bp)
GTAGCTCATCATTTTCTCTCATCAG
LOC_Os12g32400
OsAffx.31980.1.S1_at--582--6131Chr12:19518155..19518179 (25 bp)
GAGGGCTACGACACAATGACCACAG
LOC_Os12g32400
OsAffx.31980.1.S1_at--1152--10611Chr12:19518230..19518254 (25 bp)
TTCGTTTCAGCAGAGGAGACTACCA
LOC_Os12g32400
OsAffx.31980.1.S1_at--958--1791Chr12:19518306..19518330 (25 bp)
ACCGCAGCAAGGAAGTTCGCACCAA
LOC_Os12g32400
OsAffx.31980.1.S1_at--1045--6831Chr12:19518452..19518476 (25 bp)
GTTTCTGCAGAGAGCTCACAGTCTT
LOC_Os12g32400
OsAffx.31980.1.S1_at--570--3831Chr12:19518601..19518625 (25 bp)
CTGCAAGAACTGATCCCTAATGGAA
LOC_Os12g32400
OsAffx.31980.1.S1_at--24--6931Chr12:19518741..19518765 (25 bp)
GTATGTCAAGTTTCTACACCTGCAA
LOC_Os12g32400
OsAffx.31980.1.S1_at--637--4531Chr12:19518974..19518998 (25 bp)
GCCCCTTGCTTTTGACAGTGGTAAC
LOC_Os12g32400
Target Sequence 
GATTGCGCATTTGCAGTCATTGTTCTGGAGCAGCAGCGATGCTGATCCTTGTTTTGGTAGCTCATCATTTTCTCTCATCA
GTAGTGAGGGCTACGACACAATGACCACAGAGTTTGTGAATAGCAGCACAAATGTATGTTTTGATTACCAAGATGATAGC
TTCGTTTCAGCAGAGGAGACTACCATTGGTAACAAGAGAAAAGTTCAGATGGATACTGAGAATGAGCTGATGACGAACCG
CAGCAAGGAAGTTCGCACCAAGATGTCGGTGTCAAAAGCATGCAAACATTCTGTTTCTGCAGAGAGCTCACAGTCTTATT
ATGCAAAGAACAGGAGACAGAGGATCAATGAGAGATTGAGAATACTGCAAGAACTGATCCCTAATGGAACAAAAGTTGAC
ATCAGCACAATGTTGGAGGAAGCAATTCAGTATGTCAAGTTTCTACACCTGCAAATCAAGCTCTTGAGCTCTGATGAAAT
GTGGATGTATGCGCCCCTTGCTTTTGACAGTGGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis