Browse Element(s) Details


Os.11916.1.S1_at

Description gb:AK058632.1
DB_XREF= gi:32968650
TID=Os.11916.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C12, full insert sequence.
FL= gb:AK059194.1 gb:AK058632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1198010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11940Os.20102.1.S1_s_at11/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940OsAffx.18811.1.S1_at9/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940Os.20102.1.S1_at6/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11950Os.21562.1.S1_at5/1111+6627427..6630131NB-ARC domain containing protein, expressed
LOC_Os11g11960OsAffx.30939.2.S1_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11960Os.49400.1.S1_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11960Os.49400.1.S2_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11970OsAffx.7086.1.S1_at11/1111+6641902..6642609expressed protein
LOC_Os11g11980Os.11916.1.S1_at10/1111+6644543..6645681expressed protein
LOC_Os11g11990OsAffx.30939.1.S1_at10/1111+6651445..6659250NB-ARC domain containing protein, expressed
LOC_Os11g12000Os.52223.1.S1_at11/1111+6663976..6676628NBS-LRR disease resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11916.1.S1_at--168--1291Chr11:6645009..6645224 (25 bp)
AGATCCCTGGTGACTACTTCGTCGG
LOC_Os11g11980
Os.11916.1.S1_at--724--971Chr11:6645272..6645296 (25 bp)
AGGAGAGATCGAGCTTCTTGGCCAA
LOC_Os11g11980
Os.11916.1.S1_at--899--811Chr11:6645297..6645321 (25 bp)
ATGGTACTCCAATTTGTTCTTCGAA
LOC_Os11g11980
Os.11916.1.S1_at--78--6531Chr11:6645363..6645387 (25 bp)
GATTTGTCACTCTGATGCTTTGCTC
LOC_Os11g11980
Os.11916.1.S1_at--1143--9571Chr11:6645386..6645410 (25 bp)
TCTTGCTGATTTCTCTGTTTCGTTT
LOC_Os11g11980
Os.11916.1.S1_at--218--4471Chr11:6645425..6645449 (25 bp)
GCCTCGACAGCCGAGCTGAGGGATA
LOC_Os11g11980
Os.11916.1.S1_at--856--9771Chr11:6645521..6645545 (25 bp)
TAAGGCTCGGATCTGTGTTTGTGTT
LOC_Os11g11980
Os.11916.1.S1_at--676--1011Chr11:6645577..6645601 (25 bp)
AGGTTGCTTCTATTCATTTGTATAC
LOC_Os11g11980
Os.11916.1.S1_at--639--10791Chr11:6645605..6645629 (25 bp)
TTGTTCATTCGTATCATCAGAGTGC
LOC_Os11g11980
Os.11916.1.S1_at--871--5591Chr11:6645639..6645663 (25 bp)
GAAATTGTCCATTCCAATCCGGCAT
LOC_Os11g11980
Os.11916.1.S1_at--746--9191Chr11:6645663..6645684 (22 bp)
TGCCTTTTCTCCTTCCTTGAAAGAA
NONE
Target Sequence 
AGATCCCTGGTGACTACTTCGTCGGGCGTCCGGCAAACCCGCAGCAGCCGCCGTCGCAACCTCCGCGGGCGCAGGAGAGA
TCGAGCTTCTTGGCCAAATGGTACTCCAATTTGTTCTTCGAAAATCGAACAATAATTGTTTAGATTGTATTAGATTTCAT
ATCGATTTGTCACTCTGATGCTTTGCTCTTGCTGATTTCTCTGTTTCGTTTCTGCAGCTGCCCATGCCTCGACAGCCGAG
CTGAGGGATAGACGAACAAGTGCGGCGGCGGGCGTGACCGTAAATTCGATGGGAAAATTGAAGCAAATTTGCTTGGAGTG
NTAAGGCTCGGATCTGTGTTTGTGTTGCAAGTTTTGCTAATAGATGTTTGTAACTGAAGGTTGCTTCTATTCATTTGTAT
ACCAATTGTTCATTCGTATCATCAGAGTGCGAATTCGATGAAATTGTCCATTCCAATCCGGCATGCCTTTTCTCCTTCCT
TGAAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis