Browse Element(s) Details


Os.11935.1.S1_at

Description gb:AY166599.1
DB_XREF= gi:26518519
GEN=CLPD1
TID=Os.11935.1
CNT=107
FEA=FLmRNA
TIER=FL+Stack
STK=31
UG=Os.11935 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) ATP-dependent Clp protease ATP-binding subunit precursor (CLPD1) mRNA, complete cds; nuclear gene for chloroplast product.
PROD=ATP-dependent Clp protease ATP-binding subunitprecursor
FL= gb:AY166599.1 gb:AK068727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3252011/11ERD1 protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32504Os.34481.1.A1_at11/112+19219510..19229756expressed protein
LOC_Os02g32520Os.11935.1.S1_at11/112+19245486..19250435ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os02g32530Os.27096.1.S1_at11/112+19251050..19254173expressed protein
LOC_Os02g32530Os.39005.1.S1_s_at11/112+19251050..19254173expressed protein
LOC_Os02g32540Os.53774.1.S1_at10/112+19254317..19256331expressed protein
LOC_Os02g32550OsAffx.24540.1.S1_x_at11/112+19265567..19267344expressed protein
LOC_Os02g32560OsAffx.23314.1.S1_at2/112+19271177..19273284retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0009408biological_processresponse to heat
GO:0009658biological_processchloroplast organization and biogenesis
GO:0045037biological_processprotein import into chloroplast stroma
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11935.1.S1_at--726--7271Chr02:19249612..19249636 (25 bp)
GTCCAGAATTGCTCAACAGAATCGA
LOC_Os02g32520
Os.11935.1.S1_at--655--691Chr02:19249636..19249660 (25 bp)
ATGAGATGGTTGTATTCCGTCCCTT
LOC_Os02g32520
Os.11935.1.S1_at--383--91Chr02:19249649..19249673 (25 bp)
ATTCCGTCCCTTAGAGAAAACTCAG
LOC_Os02g32520
Os.11935.1.S1_at--1043--4851Chr02:19249907..19249931 (25 bp)
GCTAGCAATTCTTGATATCATCCTA
LOC_Os02g32520
Os.11935.1.S1_at--707--1051Chr02:19249942..19249966 (25 bp)
AGGGTAGGCTGTTAGCCCTTGGAAT
LOC_Os02g32520
Os.11935.1.S1_at--633--9991Chr02:19249954..19249978 (25 bp)
TAGCCCTTGGAATAGGCCTCGAGGT
LOC_Os02g32520
Os.11935.1.S1_at--583--8431Chr02:19249968..19249992 (25 bp)
GGCCTCGAGGTGTCCGATGCAATGA
LOC_Os02g32520
Os.11935.1.S1_at--1095--1371Chr02:19250049..19250073 (25 bp)
AGAGCCGTCACCCACCTGATTGAGG
LOC_Os02g32520
Os.11935.1.S1_at--337--3391Chr02:19250081..19250105 (25 bp)
CAGCGAAGCAATTCTATTTGGCGAA
LOC_Os02g32520
Os.11935.1.S1_at--281--1011Chr02:19250179..19250203 (25 bp)
AGGTTGTCCAGTTGTCTGATCCGAC
LOC_Os02g32520
Os.11935.1.S1_at--544--551Chr02:19250197..19250221 (25 bp)
ATCCGACACGGACATTCTGAAGTTC
LOC_Os02g32520
Target Sequence 
GTCCAGAATTGCTCAACAGAATCGATGAGATGGTTGTATTCCGTCCCTTAGAGAAAACTCAGATGCTAGCAATTCTTGAT
ATCATCCTACAAGAAGTGAAGGGTAGGCTGTTAGCCCTTGGAATAGGCCTCGAGGTGTCCGATGCAATGAAGGACCTGAT
TTGCGAAGAAGGCTATGACAAGAGCTACGGTGCGCGGCCACTGAGGAGAGCCGTCACCCACCTGATTGAGGATGTGATCA
GCGAAGCAATTCTATTTGGCGAATACAAGCCTGGGGACACGATACTGATGGATATTGATGCCGNGGGGAAACNTTGCATG
AGCCACCTGAATGAGAAGGTTGTCCAGTTGTCTGATCCGACACGGACATTCTGAAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis