Browse Element(s) Details


Os.53774.1.S1_at

Description gb:AK099944.1
DB_XREF= gi:32985153
TID=Os.53774.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122D20, full insert sequence.
FL= gb:AK099944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3254010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32504Os.34481.1.A1_at11/112+19219510..19229756expressed protein
LOC_Os02g32520Os.11935.1.S1_at11/112+19245486..19250435ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os02g32530Os.27096.1.S1_at11/112+19251050..19254173expressed protein
LOC_Os02g32530Os.39005.1.S1_s_at11/112+19251050..19254173expressed protein
LOC_Os02g32540Os.53774.1.S1_at10/112+19254317..19256331expressed protein
LOC_Os02g32550OsAffx.24540.1.S1_x_at11/112+19265567..19267344expressed protein
LOC_Os02g32560OsAffx.23314.1.S1_at2/112+19271177..19273284retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53774.1.S1_at--1038--651Chr02:19255359..19255383 (25 bp)
ATGCACATCCACTTGCTACTATCAG
LOC_Os02g32540
Os.53774.1.S1_at--1044--691Chr02:19255403..19255427 (25 bp)
ATGAGGGCGGCATTGCCACCAAGGA
LOC_Os02g32540
Os.53774.1.S1_at--636--3291Chr02:19255572..19255596 (25 bp)
CACAATGACTTGTTAGGCCCAAAAG
LOC_Os02g32540
Os.53774.1.S1_at--629--3431Chr02:19255614..19255638 (25 bp)
CAGATGGATGCCCTACGATGTCAAT
LOC_Os02g32540
Os.53774.1.S1_at--314--9931Chr02:19255627..19255648 (22 bp)
TACGATGTCAATGGCTCAGCAGTAA
LOC_Os02g32540
Os.53774.1.S1_at--791--7631Chr02:19256061..19256085 (25 bp)
GGGACGAGCAGACTGTATGCACATT
LOC_Os02g32540
Os.53774.1.S1_at--939--651Chr02:19256107..19256131 (25 bp)
ATGCACATTTGCTGCTTGGGCCATG
LOC_Os02g32540
Os.53774.1.S1_at--1051--8531NONE
TGGACCTCATTTGTGTTGCTGGACT
NONE
Os.53774.1.S1_at--600--8531Chr02:19256158..19256182 (25 bp)
TGGACTTGAGCCAAGCGGCAACATT
LOC_Os02g32540
Os.53774.1.S1_at--1152--71Chr02:19256180..19256204 (25 bp)
ATTGCCTACCAGAAATGCTCCAGTG
LOC_Os02g32540
Os.53774.1.S1_at--43--5091Chr02:19256205..19256229 (25 bp)
GCACCACCAGCAGGATTTCATCATA
LOC_Os02g32540
Target Sequence 
ATGCACATCCACTTGCTACTATCAGGGAGGAGTATTCGGCAGTGATGAGGGCGGCATTGCCACCAAGGAGGAGGAGGAGT
AGGGAAAGTGACTCGTGCAGCGAGCAGGATGAGGAATGTGTAGGAGGAGAAGAATTTGAACTCACTGAATGAATGCTTCT
GTGCAGTGAATCAATTTTGAGTGCACTAAAATGAAGAAGATTTAGTTGGATCACACAATGACTTGTTAGGCCCAAAAGGA
CTTGGTGAACCTCATCAGATGGATGCCCTACGATGTCAATGGCTCAGCAGTAATTTGATGAAGAGTGGCTTTGGGACGAG
CAGACTGTATGCACATTAGAACTTGCAAAGTTTGAAGCATGCACATTTGCTGCTTGGGCCATGTGAGAATTGGACCTCAT
TTGTGTTGCTGGACTTGAGCCAAGCGGCAACATTGCCTACCAGAAATGCTCCAGTGGCACCACCAGCAGGATTTCATCAT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis