Browse Element(s) Details


Os.39005.1.S1_s_at

Description gb:AU166387
DB_XREF= gi:12404786
DB_XREF=AU166387
CLONE=C11813
TID=Os.39005.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39005 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3253011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32504Os.34481.1.A1_at11/112+19219510..19229756expressed protein
LOC_Os02g32520Os.11935.1.S1_at11/112+19245486..19250435ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os02g32530Os.27096.1.S1_at11/112+19251050..19254173expressed protein
LOC_Os02g32530Os.39005.1.S1_s_at11/112+19251050..19254173expressed protein
LOC_Os02g32540Os.53774.1.S1_at10/112+19254317..19256331expressed protein
LOC_Os02g32550OsAffx.24540.1.S1_x_at11/112+19265567..19267344expressed protein
LOC_Os02g32560OsAffx.23314.1.S1_at2/112+19271177..19273284retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39005.1.S1_s_at--728--9251Chr02:19251234..19251258 (25 bp)
TCCTAGGCAACGTATTCATCATAAA
LOC_Os02g32530
Os.39005.1.S1_s_at--1100--8151Chr02:19251229..19251253 (25 bp)
GGCAACGTATTCATCATAAAGGTTT
LOC_Os02g32530
Os.39005.1.S1_s_at--468--3871Chr02:19251167..19251191 (25 bp)
CTGTTGGATGGTAATTAGTTTTTAT
LOC_Os02g32530
Os.39005.1.S1_s_at--867--431Chr02:19251144..19251168 (25 bp)
ATCTTCCTATTGAATTTTGTGCAAC
LOC_Os02g32530
Os.39005.1.S1_s_at--286--5211Chr02:19251133..19251157 (25 bp)
GAATTTTGTGCAACTATTAGTCACA
LOC_Os02g32530
Os.39005.1.S1_s_at--924--9011Chr02:19251125..19251149 (25 bp)
TGCAACTATTAGTCACATGCTTGTG
LOC_Os02g32530
Os.39005.1.S1_s_at--545--151Chr02:19251118..19251142 (25 bp)
ATTAGTCACATGCTTGTGATACATT
LOC_Os02g32530
Os.39005.1.S1_s_at--932--6471Chr02:19251101..19251125 (25 bp)
GATACATTGTATACATCCTGTTCAA
LOC_Os02g32530
Os.39005.1.S1_s_at--531--6891Chr02:19251093..19251117 (25 bp)
GTATACATCCTGTTCAAGAGGCAGA
LOC_Os02g32530
Os.39005.1.S1_s_at--1106--2091Chr02:19251089..19251113 (25 bp)
ACATCCTGTTCAAGAGGCAGATCAT
LOC_Os02g32530
Os.39005.1.S1_s_at--567--9271Chr02:19251086..19251110 (25 bp)
TCCTGTTCAAGAGGCAGATCATTTG
LOC_Os02g32530
Target Sequence 
TCCTAGGCAACGTATTCATCATAAAGGTTTTTTTTTTTNNNANAAAAGGGGGGGGGGGGGGCTAGTTACTGTTGGATGGT
AATTAGTTTTTATCTTCCTATTGAATTTTGTGCAACTATTAGTCACATGCTTGTGATACATTGTATACATCCTGTTCAAG
AGGCAGATCATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39005.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis