Browse Element(s) Details


Os.11953.1.S1_at

Description gb:NM_195554.1
DB_XREF= gi:37532467
TID=Os.11953.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0047B19.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0047B19.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g153108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15270NANA10+7763983..7767947retrotransposon protein, putative, unclassified
LOC_Os10g15279OsAffx.27854.1.S1_at3/1110+7773567..7776622hypothetical protein
LOC_Os10g15279Os.9762.1.S1_at1/1110+7773567..7776622hypothetical protein
LOC_Os10g15290OsAffx.30423.1.S1_at11/1110+7777970..7778968hypothetical protein
LOC_Os10g15300Os.13717.1.S1_at11/1110+7782550..7783259expressed protein
LOC_Os10g15310Os.11953.1.S1_at8/1110+7788439..7790310hypothetical protein
LOC_Os10g15310OsAffx.24767.1.S1_x_at1/1110+7788439..7790310hypothetical protein
LOC_Os10g15320OsAffx.18258.1.S1_at11/1110+7791909..7792637hypothetical protein
LOC_Os10g15330OsAffx.30424.1.S1_s_at11/1110+7795015..7796476hypothetical protein
LOC_Os10g15340OsAffx.32166.4.S1_at11/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340Os.36736.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340OsAffx.18435.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11953.1.S1_at--22--3431Chr10:7788273..7788297 (25 bp)
CAGACGGGCGCATTTGCCACCTCGA
NONE
Os.11953.1.S1_at--1044--4931Chr10:7788282..7788306 (25 bp)
GCATTTGCCACCTCGACCAAGAAGC
NONE
Os.11953.1.S1_at--1156--3771Chr10:7788293..7788317 (25 bp)
CTCGACCAAGAAGCCCATTGACGGG
NONE
Os.11953.1.S1_at--496--3471Chr10:7788519..7788543 (25 bp)
CAGGAGAAGACGGGAGCCTGCCTTT
LOC_Os10g15310
Os.11953.1.S1_at--1020--491Chr10:7788726..7788750 (25 bp)
ATCGTCCACGCTTGTTTGGCAGCTA
LOC_Os10g15310
Os.11953.1.S1_at--729--8771Chr10:7788738..7788762 (25 bp)
TGTTTGGCAGCTAATTCCTCACCTT
LOC_Os10g15310
Os.11953.1.S1_at--722--3231Chr10:7789079..7789103 (25 bp)
CAAGCAGCGAGGTCGCGATTTGCGA
LOC_Os10g15310
Os.11953.1.S1_at--130--4571Chr10:7789171..7789195 (25 bp)
GCGCCGGGCGCCTAGGTGGTCAGAT
LOC_Os10g15310
Os.11953.1.S1_at--506--1491Chr10:7789204..7789228 (25 bp)
AGCAACGCAGCGCTTCTCCCTGTAT
LOC_Os10g15310
Os.11953.1.S1_at--862--4891Chr10:7789215..7789239 (25 bp)
GCTTCTCCCTGTATCAATTCTTTTG
LOC_Os10g15310
Os.11953.1.S1_at--926--3871Chr10:7789223..7789247 (25 bp)
CTGTATCAATTCTTTTGGTTCCAAC
LOC_Os10g15310
Target Sequence 
CAGACGGGCGCATTTGCCACCTCGACCAAGAAGCCCATTGACGGGGACGATCTCGGTCGAGTCCCGAGGGGCCAGGGGAG
GGCACCAGCAGCTCCAGATCCAAGCATCGCCGCCGGCTTGGCAAAGGCGGAGACCAGGAGAAGACGGGAGCCTGCCTTTT
TCGCCCACGGCCTCCACCGGCTTCCCTTCCGCTGCCGCCTCGAGCTCCTCCCCACACCTTCCCGACTGGCCCTTGCCGAT
CTGCTCCGCGTTGGCGAGCTATACGGAGGAGCCAACGTCCTTCGTCCTCGTCGGCGGCCGCCGTTCCGCCTTCGTCCGCT
CGCGGCCGCCAGATCGCCACCATCGTCCACGCTTGTTTGGCAGCTAATTCCTCACCTTCAGATCTATCCCCGCGATGGCG
GCAAGCAGCGAGGTCGCGATTTGCGAGGGGCGCTGCGGCATGCAGGGAGCGGCAAGGAGCTGGGCTTATGGGGGCAGCCG
GGCAGGGGCAAACGCGCCGGGCGCCTAGGTGGTCAGATGGGAGCAGAGCAACGCAGCGCTTCTCCCTGTATCAATTCTTT
TGGTTCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis