Browse Element(s) Details


Os.11959.1.S1_at

Description gb:AK070066.1
DB_XREF= gi:32980090
TID=Os.11959.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023040N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040N16, full insert sequence.
FL= gb:AK070066.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3687011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36840Os.54475.1.S1_at11/112+22223706..22225554Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g36850OsAffx.12379.1.S1_at11/112+22228630..22229486Oxygen evolving enhancer protein 3, putative, expressed
LOC_Os02g36860OsAffx.12380.1.S1_at11/112+22231145..22231534hypothetical protein
LOC_Os02g36870Os.11959.1.S1_at11/112+22239136..22241669expressed protein
LOC_Os02g36880Os.9492.1.S1_a_at11/112+22252971..22254789No apical meristem protein, expressed
LOC_Os02g36880Os.51926.1.S1_x_at1/112+22252971..22254789No apical meristem protein, expressed
LOC_Os02g36890OsAffx.24606.3.S1_at11/112+22262051..22264368Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g36890OsAffx.24606.2.S1_x_at1/112+22262051..22264368Myb-like DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11959.1.S1_at--347--6971Chr02:22240960..22240984 (25 bp)
GTAGCTCAGCTGTTCTGTTGGACTA
LOC_Os02g36870
Os.11959.1.S1_at--50--5711Chr02:22240980..22241004 (25 bp)
GACTATGCAGTTCATTGGCCATGGT
LOC_Os02g36870
Os.11959.1.S1_at--133--7431Chr02:22241003..22241099 (25 bp)
GTGTTTTTGAGAAGCGAGCGCCTGC
LOC_Os02g36870
Os.11959.1.S1_at--1145--3231Chr02:22241119..22241143 (25 bp)
CAAGCTTTCTTGATGGCTCCATTCT
LOC_Os02g36870
Os.11959.1.S1_at--1106--111Chr02:22241139..22241257 (25 bp)
ATTCTTCGTGCTACTAGAGGCTCTT
LOC_Os02g36870
Os.11959.1.S1_at--63--7851Chr02:22241271..22241295 (25 bp)
GGTACGAACCGTATCCTGGCTTTCA
LOC_Os02g36870
Os.11959.1.S1_at--638--6211Chr02:22241404..22241428 (25 bp)
GAGGCGTCTTAATCACGTGGCCATT
LOC_Os02g36870
Os.11959.1.S1_at--341--2571Chr02:22241448..22241472 (25 bp)
AACTGTGTTAACATGTCGCTGCCAA
LOC_Os02g36870
Os.11959.1.S1_at--715--7231Chr02:22241462..22241486 (25 bp)
GTCGCTGCCAACATATTGCCTTATT
LOC_Os02g36870
Os.11959.1.S1_at--621--1211Chr02:22241506..22241530 (25 bp)
AGTTTTATGCACTCTCTTGTCTGAT
LOC_Os02g36870
Os.11959.1.S1_at--942--1911Chr02:22241611..22241635 (25 bp)
ACGGTGGTCTCTTCTGTACTGGTAC
LOC_Os02g36870
Target Sequence 
GTAGCTCAGCTGTTCTGTTGGACTATGCAGTTCATTGGCCATGGTGTTTTTGAGAAGCGAGCGCCTGCCCTCCTTGACAA
TCTTGTCCAAGCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCACAAGTTTGNTGGGTACGAACCGTATC
CTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACG
TGAAGTGTGATTTGGAAGTTGGCAACCCCCATACTGCAGAGGCGTCTTAATCACGTGGCCATTTGATATTTTGATTAGAC
GGAACTGTGTTAACATGTCGCTGCCAACATATTGCCTTATTTATGTTGTAATATATAAAGAGTTTTATGCACTCTCTTGT
CTGATGTGTATACGTTACTGGAGAATATAGAATTCTGATGATGATTGTGAACTGTATTAGAAAATAAATACAGGAAAGTC
TTTTTACGGTGGTCTCTTCTGTACTGGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis