Browse Element(s) Details


Os.12004.1.S1_at

Description gb:AK058867.1
DB_XREF= gi:32968885
TID=Os.12004.1
CNT=67
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-A10, full insert sequence.
FL= gb:AK058867.1 gb:AK071341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0299011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02950NANA5+1070454..1075388retrotransposon protein, putative, unclassified
LOC_Os05g02960Os.28943.1.S1_x_at1/115+1076008..1079030retrotransposon protein, putative, unclassified
LOC_Os05g02970Os.52398.1.S1_at11/115+1081423..1083255expressed protein
LOC_Os05g02980Os.50573.1.S1_at10/115+1086849..1088051expressed protein
LOC_Os05g02990Os.12004.1.S1_at11/115+1093800..1096088expressed protein
LOC_Os05g03000Os.49718.1.S1_at11/115+1105037..1110434Integral membrane protein TerC family protein, expressed
LOC_Os05g03010OsAffx.26702.1.S1_at11/115+1115992..1117997hypothetical protein
LOC_Os05g03020Os.33140.1.A1_a_at11/115+1120053..1123770Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12004.1.S1_at--846--10771Chr05:1095709..1095733 (25 bp)
TTGATGGCACAAAGGTCTGAGGCTT
LOC_Os05g02990
Os.12004.1.S1_at--739--7871Chr05:1095745..1095769 (25 bp)
GGTTTCATATTTAGTGTCACTTAGC
LOC_Os05g02990
Os.12004.1.S1_at--515--7451Chr05:1095758..1095782 (25 bp)
GTGTCACTTAGCTATATTATCTTAT
LOC_Os05g02990
Os.12004.1.S1_at--797--151Chr05:1095773..1095797 (25 bp)
ATTATCTTATCGACAAAGCTGGTTC
LOC_Os05g02990
Os.12004.1.S1_at--284--2691Chr05:1095788..1095812 (25 bp)
AAGCTGGTTCGATTAGCTCTCTAAA
LOC_Os05g02990
Os.12004.1.S1_at--1069--8751Chr05:1095816..1095840 (25 bp)
TGTAGATATGTGCTATGCCAGTTGC
LOC_Os05g02990
Os.12004.1.S1_at--105--9211Chr05:1095831..1095855 (25 bp)
TGCCAGTTGCAAAGTCGTATATATA
LOC_Os05g02990
Os.12004.1.S1_at--930--7451Chr05:1095950..1095974 (25 bp)
GTGTCCTACTATTAATTTTTCTGGT
LOC_Os05g02990
Os.12004.1.S1_at--565--171Chr05:1095964..1095988 (25 bp)
ATTTTTCTGGTGTTACTCTGTGTTT
LOC_Os05g02990
Os.12004.1.S1_at--432--3891Chr05:1095981..1096005 (25 bp)
CTGTGTTTTTCTGTGACGCTGATTC
LOC_Os05g02990
Os.12004.1.S1_at--622--9471Chr05:1095990..1096014 (25 bp)
TCTGTGACGCTGATTCTTGAAGTAT
LOC_Os05g02990
Target Sequence 
TTGATGGCACAAAGGTCTGAGGCTTTGACTGGGCAGGGTTTCATATTTAGTGTCACTTAGCTATATTATCTTATCGACAA
AGCTGGTTCGATTAGCTCTCTAAAATCTGTAGATATGTGCTATGCCAGTTGCAAAGTCGTATATATAAGGGTATTTGCTC
ATTGCACGTTTAAGCTTACGTTGTGAAACAATAACAGTATTCTCAGTATGGTCCGTCTGTTAGTAATCTCCGTGGAGCTA
AGTGTCCTACTATTAATTTTTCTGGTGTTACTCTGTGTTTTTCTGTGACGCTGATTCTTGAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis