Browse Element(s) Details


Os.12014.1.S1_s_at

Description gb:AK063963.1
DB_XREF= gi:32973981
TID=Os.12014.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.12014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-H12, full insert sequence.
FL= gb:AK072857.1 gb:AK063963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4492211/11phosphofructokinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44880NANA5+25996702..26002802retrotransposon protein, putative, unclassified
LOC_Os05g44890NANA5+26003418..26006759retrotransposon protein, putative, unclassified
LOC_Os05g44900Os.6662.1.S1_at11/115+26011673..26012715expressed protein
LOC_Os05g44910Os.5339.2.S1_x_at11/115+26012784..26015983Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os05g44910Os.5339.1.S1_at10/115+26012784..26015983Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os05g44916Os.8162.1.S1_at11/115+26018012..26023064Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os05g44922OsAffx.27312.1.S1_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44922Os.12014.1.S1_s_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44930Os.21832.1.S1_at11/115+26030070..26034640Protein kinase domain containing protein, expressed
LOC_Os05g44940OsAffx.15106.1.S1_at11/115+26037156..26043728Protein kinase domain containing protein
LOC_Os05g44950NANA5+26046652..26050260Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g44960OsAffx.15106.3.S1_at11/115+26052834..26056236Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12014.1.S1_s_at--225--8471Chr05:26028447..26028471 (25 bp)
TGGCCCACAGTGCTATTCATGGTGC
LOC_Os05g44922
Os.12014.1.S1_s_at--358--131Chr05:26028461..26028485 (25 bp)
ATTCATGGTGCAATGGCCGGCTATA
LOC_Os05g44922
Os.12014.1.S1_s_at--119--4491Chr05:26028476..26028500 (25 bp)
GCCGGCTATAGCTTCACTGTTGGAA
LOC_Os05g44922
Os.12014.1.S1_s_at--586--1411Chr05:26028512..26028535 (24 bp)
AGACATGCCTACATACCTTTCTATA
LOC_Os05g44922
Os.12014.1.S1_s_at--276--8671Chr05:26028747..26028771 (25 bp)
TGTGGGCGAGGCTGCTATCATCAAC
LOC_Os05g44922
Os.12014.1.S1_s_at--877--771Chr05:26028870..26028894 (25 bp)
ATGTGGCAAACTCTTTCGACCAGTC
LOC_Os05g44922
Os.12014.1.S1_s_at--399--1151Chr05:26028891..26028915 (25 bp)
AGTCTGCATCATCTTCGTCGAACAG
LOC_Os05g44922
Os.12014.1.S1_s_at--61--5471Chr05:26028924..26028948 (25 bp)
GAACTCCATCATGTGGCAAACCCTT
LOC_Os05g44922
Os.12014.1.S1_s_at--578--1611Chr05:26029012..26029036 (25 bp)
AGCTGTTGCTATTCCCGTTGAGAAA
LOC_Os05g44922
Os.12014.1.S1_s_at--202--4411Chr05:26029042..26029066 (25 bp)
GCCACGCTACGCAGTTTTGATTTAA
LOC_Os05g44922
Os.12014.1.S1_s_at--695--3751Chr05:26029101..26029125 (25 bp)
CTCTCCTGGATTGCTGGTAACTACA
LOC_Os05g44922
Target Sequence 
TGGCCCACAGTGCTATTCATGGTGCAATGGCCGGCTATAGCTTCACTGTTGGAAATGTCAACGGCAGACATGCCTACATA
CCTTTCTATAGGGTGACATCCACACGGAACAAGGTCAAGATCACTGATAGGATGTGGGCGAGGCTGCTATCATCAACCAA
CCAGCCAAGCTTCCTAAGCCAGAAGGACATCGACGAAGCCAAAGAGAACGATAGGACGGCCAACAAGCCACCACTTCCCA
CCGGCCTCAGCCATCATGTGGCAAACTCTTTCGACCAGTCTGCATCATCTTCGTCGAACAGCCAGATATGAACTCCATCA
TGTGGCAAACCCTTTCGACCAGTCTGCGTCATCGTCCTCGAACAGCGAGATGAATCCAATCTGTAGTTCTATATAGAAGC
TGTTGCTATTCCCGTTGAGAAACCTGGGCCACGCTACGCAGTTTTGATTTAATATGCATAATATCACCTGTATGAATCCA
CGGATACTCTCCTGGATTGCTGGTAACTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12014.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis