Browse Element(s) Details


Os.12022.1.S1_at

Description gb:AK061573.1
DB_XREF= gi:32971591
TID=Os.12022.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.12022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023067L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-G01, full insert sequence.
FL= gb:AK061573.1 gb:AK099156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3548011/11Protein of unknown function containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35430NANA8+22200566..22200967hypothetical protein
LOC_Os08g35440Os.6359.1.S1_at11/118+22201764..22203281Serine/threonine protein phosphatase PP1 isozyme 2, putative, expressed
LOC_Os08g35450NANA8+22212794..22217486retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g35460NANA8+22218894..22219184hypothetical protein
LOC_Os08g35470OsAffx.17347.1.S1_at11/118+22220426..22222324Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g35480Os.12022.1.S1_at11/118+22225630..22228173Protein of unknown function containing protein, expressed
LOC_Os08g35490NANA8+22229496..22230026Ctr copper transporter family protein
LOC_Os08g35500NANA8+22232205..22232830expressed protein
LOC_Os08g35510OsAffx.6033.1.S1_at11/118+22236535..22238097Cytochrome P450 family protein
LOC_Os08g35520Os.10731.1.A1_a_at11/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.53292.1.S1_at3/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.53292.1.S1_x_at3/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520OsAffx.18229.1.S1_x_at1/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.46610.1.S1_x_at1/118+22250483..22256733retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12022.1.S1_at--322--3311Chr08:22227626..22227647 (22 bp)
CACGGTCTTTGAGCTACACGATGAT
LOC_Os08g35480
Os.12022.1.S1_at--470--711Chr08:22227643..22227667 (25 bp)
ATGATGGACACATTGACCTCACTGT
LOC_Os08g35480
Os.12022.1.S1_at--1--1211Chr08:22227703..22227727 (25 bp)
AGTATACCGTGCCACCAAATGTGTG
LOC_Os08g35480
Os.12022.1.S1_at--692--6231Chr08:22227771..22227795 (25 bp)
GATGGCAGCGTTCTTGTCAAGTCTC
LOC_Os08g35480
Os.12022.1.S1_at--738--2771Chr08:22227798..22227822 (25 bp)
AAGAGGGATCCTGAGCTTCATTACT
LOC_Os08g35480
Os.12022.1.S1_at--1159--131Chr08:22227817..22227841 (25 bp)
ATTACTCCCTAGTTGGCTGCACTTG
LOC_Os08g35480
Os.12022.1.S1_at--811--3871Chr08:22227975..22227999 (25 bp)
CTGTATTTTAGCAGCCTGTCTGGCA
LOC_Os08g35480
Os.12022.1.S1_at--1002--71Chr08:22228002..22228026 (25 bp)
ATTGCCTGACGGTATTGGACGCCAT
LOC_Os08g35480
Os.12022.1.S1_at--174--8111Chr08:22228018..22228042 (25 bp)
GGACGCCATTTTTAGTGTGATTGCT
LOC_Os08g35480
Os.12022.1.S1_at--233--2751Chr08:22228072..22228096 (25 bp)
AAGAACACGCATGTCCTTGGTGATA
LOC_Os08g35480
Os.12022.1.S1_at--823--6491Chr08:22228093..22228117 (25 bp)
GATAGTTGTAACACTCTCCTGTACG
LOC_Os08g35480
Target Sequence 
CACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTGTCATCGGTCCACACCTGGAGGCTGGCCAGCGTCCCC
AGTATACCGTGCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTT
CTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGA
GGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAAGGCAGAACCGTTCCTCAAGTACCTTATTCCTT
CCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATTTTAGCAGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACG
CCATTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTA
ACACTCTCCTGTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis