Browse Element(s) Details


Os.12035.1.S1_at

Description gb:AK059780.1
DB_XREF= gi:32969798
TID=Os.12035.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12035 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-306-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-C03, full insert sequence.
FL= gb:AK059780.1 gb:AK104571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5013011/11hydrolase, NUDIX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50120NANA2+30607894..30609043retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50130Os.12035.1.S1_at11/112+30619799..30620996hydrolase, NUDIX family protein, expressed
LOC_Os02g50140OsAffx.24805.1.S1_s_at11/112+30625495..30626800ABA-induced protein, putative
LOC_Os02g50150OsAffx.24806.1.S1_at11/112+30630253..30632610Caleosin related protein
LOC_Os02g50150OsAffx.28165.1.S1_at1/112+30630253..30632610Caleosin related protein
LOC_Os02g50174OsAffx.12573.1.S1_s_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174Os.9760.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.12573.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.26548.1.S1_at3/112+30636523..30648727Caleosin related protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12035.1.S1_at--554--9471Chr02:30620485..30620509 (25 bp)
TCTGCGCTGTAAACCCAACCAAAAT
LOC_Os02g50130
Os.12035.1.S1_at--340--3291Chr02:30620510..30620534 (25 bp)
CAAAGCGAGCTGAGTCGCGCGAGAA
LOC_Os02g50130
Os.12035.1.S1_at--1109--2371Chr02:30620538..30620562 (25 bp)
AAACGGGCGGGCTACGAGCACAGCA
LOC_Os02g50130
Os.12035.1.S1_at--1143--10631Chr02:30620594..30620618 (25 bp)
TTCGCTCTCCCGGTGAAGCGGCAGG
LOC_Os02g50130
Os.12035.1.S1_at--244--6451Chr02:30620631..30620655 (25 bp)
GATCACATCTCGATCGAGCACCATA
LOC_Os02g50130
Os.12035.1.S1_at--713--5931Chr02:30620646..30620670 (25 bp)
GAGCACCATATATTTTGGCCGCCCT
LOC_Os02g50130
Os.12035.1.S1_at--73--9431Chr02:30620767..30620791 (25 bp)
TCGTGTATACGTACGTCGCGGCGAA
LOC_Os02g50130
Os.12035.1.S1_at--484--6391Chr02:30620845..30620869 (25 bp)
GATCGAAGCTGGAACAAGCCAATTA
LOC_Os02g50130
Os.12035.1.S1_at--906--10471Chr02:30620872..30620896 (25 bp)
TTAAAACACCACATTGCGAAAGCAA
LOC_Os02g50130
Os.12035.1.S1_at--301--7071Chr02:30620945..30620969 (25 bp)
GTAATTACCAGTGCCATTTCGTGTC
LOC_Os02g50130
Os.12035.1.S1_at--1143--9171Chr02:30620956..30620980 (25 bp)
TGCCATTTCGTGTCGGTACAATTAA
LOC_Os02g50130
Target Sequence 
TCTGCGCTGTAAACCCAACCAAAATCAAAGCGAGCTGAGTCGCGCGAGAAGGGAAACGGGCGGGCTACGAGCACAGCACG
GGCGGCGGCGCGAAGTCGCCGGCGTCGTGTTCGCTCTCCCGGTGAAGCGGCAGGCCGGCCGGGCTCGATCACATCTCGAT
CGAGCACCATATATTTTGGCCGCCCTCACCGGAGAGCGAGACGACGGCGGACGAATGCCCCGCGCGGAGATCGGAGCACG
CCGACGACGACGACTCTTCATTTGGGGTTGCAGGGGTCGTCGTCGTGTATACGTACGTCGCGGCGAAATAACGGCGCGAG
AATTTTAGAAAGTTTGAAGATTCGGCATCTTGTAAAAAAAGATCGAAGCTGGAACAAGCCAATTAATTTAAAACACCACA
TTGCGAAAGCAATTCGAGATTCTTNCTTTGAAGCAANAAAAAGTGTCAAAATGAACCGCAGTAATTACCAGTGCCATTTC
GTGTCGGTACAATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis