Browse Element(s) Details


OsAffx.24806.1.S1_at

Description tigr:9630.m04913
TID=OsAffx.24806.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY056102 At1g70670F5A18_15
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5015011/11Caleosin related protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50120NANA2+30607894..30609043retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50130Os.12035.1.S1_at11/112+30619799..30620996hydrolase, NUDIX family protein, expressed
LOC_Os02g50140OsAffx.24805.1.S1_s_at11/112+30625495..30626800ABA-induced protein, putative
LOC_Os02g50150OsAffx.24806.1.S1_at11/112+30630253..30632610Caleosin related protein
LOC_Os02g50150OsAffx.28165.1.S1_at1/112+30630253..30632610Caleosin related protein
LOC_Os02g50174OsAffx.12573.1.S1_s_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174Os.9760.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.12573.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.26548.1.S1_at3/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50200Os.56026.1.A1_at10/112+30649418..3065051633 kDa secretory protein, putative, expressed
LOC_Os02g50210Os.7229.1.S1_at10/112+30652557..30653352Erwinia induced protein 2, putative, expressed
LOC_Os02g50220OsAffx.24807.1.S1_at10/112+30655447..30658484expressed protein
LOC_Os02g50220Os.50196.2.S1_x_at1/112+30655447..30658484expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005509molecular_functioncalcium ion binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24806.1.S1_at--368--5091Chr02:30631122..30631146 (25 bp)
GCACCCTCGGATTTGGGATTTTCGG
LOC_Os02g50150
OsAffx.24806.1.S1_at--57--7131Chr02:30631531..30631555 (25 bp)
GTCATGGTTTTCTATCTATGTACAG
LOC_Os02g50150
OsAffx.24806.1.S1_at--154--6491Chr02:30631583..30631607 (25 bp)
GATACGGGTGCATTCGATTCTGAAG
LOC_Os02g50150
OsAffx.24806.1.S1_at--185--3011Chr02:30632007..30632031 (25 bp)
AATGAGATATTCACCAGGCATGCAA
LOC_Os02g50150
OsAffx.24806.1.S1_at--934--5731Chr02:30632043..30632067 (25 bp)
GACGGCCTGACATCAGACGAGCTGG
LOC_Os02g50150
OsAffx.24806.1.S1_at--631--6031Chr02:30632070..30632094 (25 bp)
GAGATGCTTCATGCATACGCAGATC
LOC_Os02g50150
OsAffx.24806.1.S1_at--571--3011Chr02:30632468..30632492 (25 bp)
AATGCAGGCTCCAGGCTGCAACAGA
LOC_Os02g50150
OsAffx.24806.1.S1_at--451--3851Chr02:30632483..30632507 (25 bp)
CTGCAACAGAGTGGCGGGCGACATT
LOC_Os02g50150
OsAffx.24806.1.S1_at--291--2931Chr02:30632524..30632548 (25 bp)
AAGGACGACATCCTTCGCAAGGACA
LOC_Os02g50150
OsAffx.24806.1.S1_at--24--5191Chr02:30632540..30632564 (25 bp)
GCAAGGACACCGTCAGAGCCGTCTA
LOC_Os02g50150
OsAffx.24806.1.S1_at--529--1371Chr02:30632554..30632578 (25 bp)
AGAGCCGTCTACGACGGGAGCTTCT
LOC_Os02g50150
Target Sequence 
GCACCCTCGGATTTGGGATTTTCGGCGCCACCGAAGACGCAGATGGGTCATGGTTTTCTATCTATGTACAGAACATTCAT
AAAGGGATCCATGGAAGTGATACGGGTGCATTCGATTCTGAAGGAAGGTTTGTTAGTGAAAAATTCAATGAGATATTCAC
CAGGCATGCAAAAACTGTACCCGACGGCCTGACATCAGACGAGCTGGACGAGATGCTTCATGCATACGCAGATCATACAG
AGCACAAAGACAGCTCAGGATGTTTAGAGAAAAATTTTGAAAGTAAACTCGGCCTAAGATCGAGAAAATGCAGGCTCCAG
GCTGCAACAGAGTGGCGGGCGACATTCGAGGCCGCCAAGGACAAGGACGACATCCTTCGCAAGGACACCGTCAGAGCCGT
CTACGACGGGAGCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis