Browse Element(s) Details


OsAffx.28165.1.S1_at

Description tigr:9634.m04691
TID=OsAffx.28165.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to A. thaliana C3HC4-type RING zinc finger protein AB005237
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g501501/11Caleosin related protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50120NANA2+30607894..30609043retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50130Os.12035.1.S1_at11/112+30619799..30620996hydrolase, NUDIX family protein, expressed
LOC_Os02g50140OsAffx.24805.1.S1_s_at11/112+30625495..30626800ABA-induced protein, putative
LOC_Os02g50150OsAffx.24806.1.S1_at11/112+30630253..30632610Caleosin related protein
LOC_Os02g50150OsAffx.28165.1.S1_at1/112+30630253..30632610Caleosin related protein
LOC_Os02g50174OsAffx.12573.1.S1_s_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174Os.9760.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.12573.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.26548.1.S1_at3/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50200Os.56026.1.A1_at10/112+30649418..3065051633 kDa secretory protein, putative, expressed
LOC_Os02g50210Os.7229.1.S1_at10/112+30652557..30653352Erwinia induced protein 2, putative, expressed
LOC_Os02g50220OsAffx.24807.1.S1_at10/112+30655447..30658484expressed protein
LOC_Os02g50220Os.50196.2.S1_x_at1/112+30655447..30658484expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005509molecular_functioncalcium ion binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28165.1.S1_at--968--2911Chr06:29078632..29078656 (25 bp)
AAGGAGGCGAGCTTAGCTCCTGCTG
NONE
OsAffx.28165.1.S1_at--459--7171Chr06:29078597..29078621 (25 bp)
GTCTCCAGCGTTTAGAGGCTTCTTC
NONE
OsAffx.28165.1.S1_at--452--6212Chr02:30632509..30632548 (25 bp)
GAGGCCGCCAAGGTTCGCAAGGACA
LOC_Os02g50150
OsAffx.28165.1.S1_at--927--10631Chr06:29078448..29078472 (25 bp)
TTCGCAAGGACAGGGTGCTGTTGAT
NONE
OsAffx.28165.1.S1_at--845--8471Chr06:29078406..29078430 (25 bp)
TGGCGGAGCCTGACCCGGAAGCCTA
NONE
OsAffx.28165.1.S1_at--30--1871Chr06:29078382..29078406 (25 bp)
ACGACCGGCGGTTCGGGCACCGCAT
NONE
OsAffx.28165.1.S1_at--977--551Chr06:29078359..29078383 (25 bp)
ATCCTGGTGAGCACCGCCGGTGGCT
NONE
OsAffx.28165.1.S1_at--940--7291Chr06:29078290..29078314 (25 bp)
GTGCGACCATCCGATCTGATGTTCG
NONE
OsAffx.28165.1.S1_at--753--1711Chr06:29078285..29078309 (25 bp)
ACCATCCGATCTGATGTTCGTCCGG
NONE
OsAffx.28165.1.S1_at--538--2571Chr06:29078200..29078224 (25 bp)
AACGGCAGGAGCGTAATCAGCGCGA
NONE
OsAffx.28165.1.S1_at--536--391Chr06:29078185..29078209 (25 bp)
ATCAGCGCGAGGAGCCTATCGGAGC
NONE
Target Sequence 
AAGGAGGCGAGCTTAGCTCCTGCTGCTCCTGCTCCGTCTCCAGCGTTTAGAGGCTTCTTCTCCGGCCGGCACTCGACGGG
GTCGGTACGGGCGCCAGGGAGGGTTGGCCCTGCCTCACGCCGGTCGGCCGATCTCGTCGGAGGCGACGGCGGTGCGGTGG
TGGGATGCTTCGAGGCCGCCAAGGTTCGCAAGGACAGGGTGCTGTTGATGGAGCCGGCGGCCGCGGTGGCGGAGCCTGAC
CCGGAAGCCTACGACCGGCGGTTCGGGCACCGCATCCTGGTGAGCACCGCCGGTGGCTGCGAGGACGAGACGGCACCGGC
GGCGAAGCAGCGGTGGAGCGAGGTGCGACCATCCGATCTGATGTTCGTCCGGTCGGAGATGCTGGTGACGGAGGCCGGCC
GGTACTCCTGCTCCGCCGCCGTCCACTCCGGCAACGGCAGGAGCGTAATCAGCGCGAGGAGCCTATCGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis